Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

37410147 .. 37414690

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG332000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGATCAGTCAGTCTTTCGCTTTCTTTTGCGAGTTTTTATGCCGGACATGGTCACTCTCTGTTACCAGGTGCTGGAGATTTTGCTTGGGTCCACAGATTACTCGACTTGGCGGACATTTGGACCCTCGGCTGCATCTTCGCTGAGATGGTTATCGGGGATGTACTGTTTGTTGGAAGTACTAAGATTCTCCCAGGCTCATCTCCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGGTGAGGAGTTCAAACATCTTCAAGTACATTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTTGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

290

Amino Acids

30.83

Weight (kDa)

5.02

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	184 - 248	4.4e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	2 cut(s)	74, 458
AciI	CCGC	2 cut(s)	113, 722
AclWI	GGATC	3 cut(s)	13, 320, 774
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	4 cut(s)	219, 564, 617, 771
AcuI	CTGAAG	2 cut(s)	492, 837
AfaI	GTAC	4 cut(s)	165, 181, 293, 654
AfiI	CCNNNNNNNGG	3 cut(s)	74, 458, 807
AgsI	TTSAA	6 cut(s)	225, 279, 289, 498, 602, 617
AjnI	CCWGG	5 cut(s)	67, 193, 205, 329, 523
AluBI	AGCT	2 cut(s)	398, 783
AluI	AGCT	2 cut(s)	398, 783
Alw21I	GWGCWC	1 cut(s)	532
AlwI	GGATC	3 cut(s)	13, 320, 774
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	132, 780
ApoI	RAATTY	4 cut(s)	219, 564, 617, 771
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	91, 123
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	91, 123
BanI	GGYRCC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	2 cut(s)	246, 582
BbvI	GCAGC	2 cut(s)	119, 792
BccI	CCATC	3 cut(s)	142, 460, 787
BceAI	ACGGC	2 cut(s)	408, 504
BciT130I	CCWGG	5 cut(s)	69, 195, 207, 331, 525
BciVI	GTATCC	2 cut(s)	790, 868
BfuI	GTATCC	2 cut(s)	790, 868
BisI	GCNGC	3 cut(s)	133, 723, 781
BlsI	GCNGC	3 cut(s)	134, 724, 782
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	5 cut(s)	69, 195, 207, 331, 525
Bme18I	GGWCC	2 cut(s)	91, 123
BmgT120I	GGNCC	2 cut(s)	91, 123
BmiI	GGNNCC	4 cut(s)	92, 125, 640, 703
BmrFI	CCNGG	5 cut(s)	69, 195, 207, 331, 525
BmsI	GCATC	1 cut(s)	144
BpmI	CTGGAG	4 cut(s)	96, 189, 285, 390
Bpu10I	CCTNAGC	2 cut(s)	246, 582
BpuEI	CTTGAG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	127, 193, 329, 330
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 458, 807
Bse1I	ACTGG	2 cut(s)	302, 373
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	5 cut(s)	69, 195, 207, 331, 525
BseDI	CCNNGG	4 cut(s)	127, 193, 329, 330
BseGI	GGATG	4 cut(s)	166, 452, 798, 812
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	74, 458, 807
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	6 cut(s)	135, 237, 433, 557, 573, 836
BseNI	ACTGG	2 cut(s)	302, 373
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	119, 792
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	45, 801
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	3 cut(s)	74, 458, 807
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	5, 325, 766
BspACI	CCGC	2 cut(s)	113, 722
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	6 cut(s)	136, 238, 432, 556, 574, 835
BspLI	GGNNCC	4 cut(s)	92, 125, 640, 703
BspPI	GGATC	3 cut(s)	13, 320, 774
BspT107I	GGYRCC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	302, 373
BssECI	CCNNGG	4 cut(s)	127, 193, 329, 330
BssMI	GATC	3 cut(s)	5, 325, 766
Bst2UI	CCWGG	5 cut(s)	69, 195, 207, 331, 525
Bst4CI	ACNGT	3 cut(s)	168, 652, 688
Bst6I	CTCTTC	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstAUI	TGTACA	1 cut(s)	652
BstDEI	CTNAG	7 cut(s)	144, 183, 246, 419, 543, 582, 822
BstF5I	GGATG	4 cut(s)	166, 452, 798, 812
BstKTI	GATC	3 cut(s)	8, 328, 769
BstMBI	GATC	3 cut(s)	5, 325, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 786
BstNI	CCWGG	5 cut(s)	69, 195, 207, 331, 525
BstSCI	CCNGG	5 cut(s)	67, 193, 205, 329, 523
BstV1I	GCAGC	2 cut(s)	119, 792
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	2 cut(s)	790, 868
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	4 cut(s)	166, 452, 798, 812
BtsIMutI	CAGTG	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	91, 123
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	164, 180, 292, 653
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	1 cut(s)	50
CviQI	GTAC	4 cut(s)	164, 180, 292, 653
DdeI	CTNAG	7 cut(s)	144, 183, 246, 419, 543, 582, 822
DpnI	GATC	3 cut(s)	7, 327, 768
DpnII	GATC	3 cut(s)	5, 325, 766
DrdI	GACNNNNNNGTC	1 cut(s)	519
DseDI	GACNNNNNNGTC	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	856
EciI	GGCGGA	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	91, 123
Eco57I	CTGAAG	2 cut(s)	492, 837
EcoRII	CCWGG	5 cut(s)	67, 193, 205, 329, 523
FaeI	CATG	1 cut(s)	53
FaiI	YATR	8 cut(s)	42, 51, 354, 474, 579, 749, 786, 836
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	133, 723, 781
FokI	GGATG	4 cut(s)	173, 439, 799, 805
Fsp4HI	GCNGC	3 cut(s)	133, 723, 781
GluI	GCNGC	3 cut(s)	133, 723, 781
GsuI	CTGGAG	4 cut(s)	96, 189, 285, 390
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	2 cut(s)	45, 801
Hin1II	CATG	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	6 cut(s)	187, 407, 428, 440, 736, 830
HpaI	GTTAAC	1 cut(s)	648
HpaII	CCGG	2 cut(s)	45, 801
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	94, 648
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	4 cut(s)	311, 459, 510, 740
Hpy8I	GTNNAC	2 cut(s)	94, 648
HpyAV	CCTTC	4 cut(s)	259, 596, 600, 855
HpyCH4III	ACNGT	3 cut(s)	168, 652, 688
HpyCH4V	TGCA	4 cut(s)	135, 260, 359, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 786
HpyF3I	CTNAG	7 cut(s)	144, 183, 246, 419, 543, 582, 822
Hsp92II	CATG	1 cut(s)	53
KspAI	GTTAAC	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	5, 325, 766
LmnI	GCTCC	4 cut(s)	209, 304, 535, 638
Lsp1109I	GCAGC	2 cut(s)	119, 792
LweI	GCATC	1 cut(s)	144
MabI	ACCWGGT	1 cut(s)	67
MaeIII	GTNAC	4 cut(s)	53, 63, 235, 538
MalI	GATC	3 cut(s)	7, 327, 768
MboI	GATC	3 cut(s)	5, 325, 766
MboII	GAAGA	5 cut(s)	130, 277, 486, 498, 843
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	7 cut(s)	219, 382, 434, 564, 617, 681, 771
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	2 cut(s)	647, 871
MspI	CCGG	2 cut(s)	45, 801
MspR9I	CCNGG	5 cut(s)	69, 195, 207, 331, 525
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	5 cut(s)	69, 195, 207, 331, 525
MwoI	GCNNNNNNNGC	2 cut(s)	559, 786
NdeII	GATC	3 cut(s)	5, 325, 766
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	4 cut(s)	92, 125, 640, 703
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	53
PasI	CCCWGGG	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	5 cut(s)	187, 407, 440, 736, 830
PflFI	GACNNNGTC	1 cut(s)	51
PflMI	CCANNNNNTGG	2 cut(s)	74, 458
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	134, 724, 782
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	5 cut(s)	67, 193, 205, 329, 523
PspGI	CCWGG	5 cut(s)	67, 193, 205, 329, 523
PspN4I	GGNNCC	4 cut(s)	92, 125, 640, 703
PspPI	GGNCC	2 cut(s)	91, 123
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	51
RsaI	GTAC	4 cut(s)	165, 181, 293, 654
RsaNI	GTAC	4 cut(s)	164, 180, 292, 653
SaqAI	TTAA	2 cut(s)	647, 871
SatI	GCNGC	3 cut(s)	133, 723, 781
Sau3AI	GATC	3 cut(s)	5, 325, 766
Sau96I	GGNCC	2 cut(s)	91, 123
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	5 cut(s)	69, 195, 207, 331, 525
SduI	GDGCHC	1 cut(s)	532
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	2 cut(s)	91, 123
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	7 cut(s)	219, 382, 434, 564, 617, 681, 771
SsiI	CCGC	2 cut(s)	113, 722
StyD4I	CCNGG	5 cut(s)	67, 193, 205, 329, 523
TaaI	ACNGT	3 cut(s)	168, 652, 688
TaqI	TCGA	1 cut(s)	105
TasI	AATT	7 cut(s)	219, 382, 434, 564, 617, 681, 771
TatI	WGTACW	4 cut(s)	163, 179, 291, 652
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	5 cut(s)	187, 407, 440, 736, 830
Tru1I	TTAA	2 cut(s)	647, 871
Tru9I	TTAA	2 cut(s)	647, 871
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	132, 780
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	231, 341, 693
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	1 cut(s)	51
Van91I	CCANNNNNTGG	2 cut(s)	74, 458
VpaK11BI	GGWCC	2 cut(s)	91, 123
XapI	RAATTY	4 cut(s)	219, 564, 617, 771
XmnI	GAANNNNTTC	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.