Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

12240446 .. 12259373

Gene Structure 18928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG106600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGATAACTATAGGATTGAACAATACCGAGCTGAGATTAAGAGACTTCAGGAATCTGAGGCAAGAATTAAAGCATTATCAAAAAACTATGCAGCTTTGCTAAAGGAAAAAGAAAGACGTCGCAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTTATCTCCAGGTGCTTTTAGGGAGTGGTGGATATCGATCAGAGAATGCTAATGTCACTAATGCAGCTACTGGTCCATTCCTGTCATCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGTGGACATTATTCGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGCTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCAGATTGAGGTCATCCTACTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAATTGGAGGGGTGAGGCATCATGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

323

Amino Acids

35.5

Weight (kDa)

9.54

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Di19_C	PF14571	54 - 133	1.9e-14	Stress-induced protein Di19, C-terminal
KH_1	PF00013	208 - 272	4.3e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	591
AatII	GACGTC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	530
AciI	CCGC	1 cut(s)	794
AclWI	GGATC	3 cut(s)	186, 392, 846
AcoI	YGGCCR	2 cut(s)	172, 589
AcsI	RAATTY	5 cut(s)	289, 315, 636, 689, 843
AcuI	CTGAAG	3 cut(s)	32, 564, 907
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	2 cut(s)	365, 726
AfiI	CCNNNNNNNGG	4 cut(s)	175, 302, 530, 879
AgsI	TTSAA	6 cut(s)	20, 289, 321, 570, 674, 689
AjnI	CCWGG	3 cut(s)	198, 401, 595
AluBI	AGCT	5 cut(s)	32, 95, 257, 470, 855
AluI	AGCT	5 cut(s)	32, 95, 257, 470, 855
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	37, 168
AlwI	GGATC	3 cut(s)	186, 392, 846
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	172, 589
ApeKI	GCWGC	3 cut(s)	92, 254, 852
ApoI	RAATTY	5 cut(s)	289, 315, 636, 689, 843
Asp700I	GAANNNNTTC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	964
AvaII	GGWCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	104, 266, 864
BccI	CCATC	2 cut(s)	532, 859
BceAI	ACGGC	2 cut(s)	480, 576
BciT130I	CCWGG	3 cut(s)	200, 403, 597
BciVI	GTATCC	2 cut(s)	862, 938
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	37, 168
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	114
BfuI	GTATCC	2 cut(s)	862, 938
BisI	GCNGC	4 cut(s)	93, 255, 795, 853
BlsI	GCNGC	4 cut(s)	94, 256, 796, 854
Bme1390I	CCNGG	4 cut(s)	176, 200, 403, 597
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	712, 775
BmrFI	CCNGG	4 cut(s)	176, 200, 403, 597
BmsI	GCATC	2 cut(s)	308, 967
BpmI	CTGGAG	3 cut(s)	182, 357, 462
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	169, 401, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 302, 530, 879
Bse1I	ACTGG	3 cut(s)	265, 374, 445
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	200, 403, 597
BseCI	ATCGAT	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	169, 401, 402
BseGI	GGATG	3 cut(s)	524, 870, 884
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	4 cut(s)	175, 302, 530, 879
BseMII	CTCAG	6 cut(s)	24, 48, 333, 505, 629, 906
BseNI	ACTGG	3 cut(s)	265, 374, 445
BseXI	GCAGC	3 cut(s)	104, 266, 864
BshFI	GGCC	2 cut(s)	174, 591
BshNI	GGYRCC	1 cut(s)	773
BshVI	ATCGAT	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	4 cut(s)	175, 302, 530, 879
BsmAI	GTCTC	2 cut(s)	37, 168
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	174, 591
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	178, 227, 397, 838
BspACI	CCGC	1 cut(s)	794
BspANI	GGCC	2 cut(s)	174, 591
BspCNI	CTCAG	6 cut(s)	25, 49, 334, 504, 628, 905
BspDI	ATCGAT	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	712, 775
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	186, 392, 846
BspT107I	GGYRCC	1 cut(s)	773
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	265, 374, 445
BssECI	CCNNGG	3 cut(s)	169, 401, 402
BssMI	GATC	4 cut(s)	178, 227, 397, 838
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	3 cut(s)	200, 403, 597
Bst4CI	ACNGT	3 cut(s)	162, 724, 760
Bst6I	CTCTTC	1 cut(s)	926
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	131
BstDEI	CTNAG	6 cut(s)	33, 57, 342, 491, 615, 892
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	524, 870, 884
BstKTI	GATC	4 cut(s)	181, 230, 400, 841
BstMAI	GTCTC	2 cut(s)	37, 168
BstMBI	GATC	4 cut(s)	178, 227, 397, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 631, 858
BstNI	CCWGG	3 cut(s)	200, 403, 597
BstSCI	CCNGG	4 cut(s)	174, 198, 401, 595
BstSFI	CTRYAG	1 cut(s)	10
BstSNI	TACGTA	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	104, 266, 864
BstX2I	RGATCY	2 cut(s)	178, 397
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	2 cut(s)	178, 397
Bsu15I	ATCGAT	1 cut(s)	226
BsuI	GTATCC	2 cut(s)	862, 938
BsuRI	GGCC	2 cut(s)	174, 591
BsuTUI	ATCGAT	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	524, 870, 884
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	158, 366, 765
BveI	ACCTGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	364, 725
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	1 cut(s)	962
CviQI	GTAC	2 cut(s)	364, 725
DdeI	CTNAG	6 cut(s)	33, 57, 342, 491, 615, 892
DpnI	GATC	4 cut(s)	180, 229, 399, 840
DpnII	GATC	4 cut(s)	178, 227, 397, 838
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	172, 589
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
Eco105I	TACGTA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	32, 564, 907
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	3 cut(s)	198, 401, 595
EcoRV	GATATC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	967
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	965
FaiI	YATR	9 cut(s)	12, 90, 426, 546, 651, 821, 858, 906, 963
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	1 cut(s)	961
Fnu4HI	GCNGC	4 cut(s)	93, 255, 795, 853
FokI	GGATG	3 cut(s)	511, 871, 877
Fsp4HI	GCNGC	4 cut(s)	93, 255, 795, 853
GluI	GCNGC	4 cut(s)	93, 255, 795, 853
GsuI	CTGGAG	3 cut(s)	182, 357, 462
HaeIII	GGCC	2 cut(s)	174, 591
HapII	CCGG	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	965
HinfI	GANTC	6 cut(s)	53, 479, 500, 512, 808, 900
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	964
Hpy166II	GTNNAC	2 cut(s)	366, 658
Hpy188I	TCNGA	3 cut(s)	58, 232, 618
Hpy188III	TCNNGA	7 cut(s)	50, 185, 303, 383, 531, 582, 812
Hpy8I	GTNNAC	2 cut(s)	366, 658
Hpy99I	CGWCG	2 cut(s)	123, 702
HpyAV	CCTTC	3 cut(s)	668, 672, 925
HpyCH4III	ACNGT	3 cut(s)	162, 724, 760
HpyCH4IV	ACGT	2 cut(s)	118, 130
HpyCH4V	TGCA	7 cut(s)	92, 254, 299, 356, 431, 634, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 631, 858
HpyF3I	CTNAG	6 cut(s)	33, 57, 342, 491, 615, 892
HpySE526I	ACGT	2 cut(s)	118, 130
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	965
Kzo9I	GATC	4 cut(s)	178, 227, 397, 838
LmnI	GCTCC	4 cut(s)	305, 376, 607, 710
Lsp1109I	GCAGC	3 cut(s)	104, 266, 864
LweI	GCATC	2 cut(s)	308, 967
MaeII	ACGT	2 cut(s)	118, 130
MaeIII	GTNAC	4 cut(s)	126, 244, 331, 610
MalI	GATC	4 cut(s)	180, 229, 399, 840
MboI	GATC	4 cut(s)	178, 227, 397, 838
MboII	GAAGA	4 cut(s)	173, 558, 570, 913
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	2 cut(s)	178, 397
MhlI	GDGCHC	1 cut(s)	604
MlyI	GAGTC	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	4 cut(s)	39, 69, 941, 970
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	4 cut(s)	176, 200, 403, 597
MunI	CAATTG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	200, 403, 597
MwoI	GCNNNNNNNGC	3 cut(s)	305, 631, 858
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	4 cut(s)	178, 227, 397, 838
NlaIII	CATG	1 cut(s)	965
NlaIV	GGNNCC	2 cut(s)	712, 775
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	967
PasI	CCCWGGG	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	5 cut(s)	53, 479, 512, 808, 900
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	94, 256, 796, 854
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	3 cut(s)	198, 401, 595
PspGI	CCWGG	3 cut(s)	198, 401, 595
PspN4I	GGNNCC	2 cut(s)	712, 775
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	178, 397
RsaI	GTAC	2 cut(s)	365, 726
RsaNI	GTAC	2 cut(s)	364, 725
SaqAI	TTAA	4 cut(s)	39, 69, 941, 970
SatI	GCNGC	4 cut(s)	93, 255, 795, 853
Sau3AI	GATC	4 cut(s)	178, 227, 397, 838
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	4 cut(s)	176, 200, 403, 597
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	308, 967
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SnaBI	TACGTA	1 cut(s)	131
SsiI	CCGC	1 cut(s)	794
StyD4I	CCNGG	4 cut(s)	174, 198, 401, 595
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	162, 724, 760
TaiI	ACGT	2 cut(s)	121, 133
TaqI	TCGA	1 cut(s)	226
TatI	WGTACW	2 cut(s)	363, 724
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	5 cut(s)	53, 479, 512, 808, 900
Tru1I	TTAA	4 cut(s)	39, 69, 941, 970
Tru9I	TTAA	4 cut(s)	39, 69, 941, 970
TscAI	CASTG	3 cut(s)	165, 373, 765
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	92, 254, 852
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	327, 413, 765
TspRI	CASTG	3 cut(s)	165, 373, 765
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	5 cut(s)	289, 315, 636, 689, 843
XmnI	GAANNNNTTC	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.