Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

77960157 .. 77965072

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG489900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTGGAGTTTTCGCAATTTGCAGGCTACAGATTCTCAGGTTGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACGCTACTGTCATATGGCGGCACAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGCGGAGTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCATGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGGTTTTGGGGTTTTCTTTTGTGACATATGTTCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

165

Amino Acids

18.01

Weight (kDa)

5.58

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	29 - 70	2.9e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	371
AciI	CCGC	2 cut(s)	96, 200
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	411, 491
AjnI	CCWGG	2 cut(s)	242, 436
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	2 cut(s)	244, 438
BclI	TGATCA	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	244, 438
BmiI	GGNNCC	2 cut(s)	114, 139
BmrFI	CCNGG	2 cut(s)	244, 438
BpmI	CTGGAG	3 cut(s)	124, 198, 303
BpuEI	CTTGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	189, 242, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	3 cut(s)	141, 215, 286
BseBI	CCWGG	2 cut(s)	244, 438
BseDI	CCNNGG	3 cut(s)	189, 242, 243
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	50, 346, 470
BseNI	ACTGG	3 cut(s)	141, 215, 286
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	371
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	163, 238
BspACI	CCGC	2 cut(s)	96, 200
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	49, 345, 469
BspHI	TCATGA	1 cut(s)	494
BspLI	GGNNCC	2 cut(s)	114, 139
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	141, 215, 286
BssECI	CCNNGG	3 cut(s)	189, 242, 243
BssMI	GATC	2 cut(s)	163, 238
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	244, 438
Bst4CI	ACNGT	2 cut(s)	87, 103
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	36, 332, 456
BstF5I	GGATG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	166, 241
BstMBI	GATC	2 cut(s)	163, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	244, 438
BstSCI	CCNGG	2 cut(s)	242, 436
BstSFI	CTRYAG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	494
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	171, 338, 495
CviJI	RGCY	7 cut(s)	26, 138, 248, 311, 336, 398, 432
CviKI_1	RGCY	7 cut(s)	26, 138, 248, 311, 336, 398, 432
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	36, 332, 456
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	2 cut(s)	165, 240
DpnII	GATC	2 cut(s)	163, 238
DrdI	GACNNNNNNGTC	1 cut(s)	432
DseDI	GACNNNNNNGTC	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	242, 436
EcoT14I	CCWWGG	1 cut(s)	189
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	174, 341, 498
FatI	CATG	3 cut(s)	170, 337, 494
FauNDI	CATATG	2 cut(s)	91, 484
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	3 cut(s)	124, 198, 303
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	174, 341, 498
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	5 cut(s)	32, 156, 320, 341, 353
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	224, 372, 423, 495
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	87, 103
HpyCH4V	TGCA	2 cut(s)	22, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	3 cut(s)	36, 332, 456
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	174, 341, 498
HspAI	GCGC	1 cut(s)	113
KasI	GGCGCC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 238
LmnI	GCTCC	3 cut(s)	143, 217, 448
MaeIII	GTNAC	3 cut(s)	143, 451, 478
MalI	GATC	2 cut(s)	165, 240
MboI	GATC	2 cut(s)	163, 238
MboII	GAAGA	3 cut(s)	59, 399, 411
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	3 cut(s)	16, 295, 347
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	51, 122, 278, 312, 379, 388
MspR9I	CCNGG	2 cut(s)	244, 438
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	244, 438
MwoI	GCNNNNNNNGC	1 cut(s)	119
NarI	GGCGCC	1 cut(s)	113
NdeI	CATATG	2 cut(s)	91, 484
NdeII	GATC	2 cut(s)	163, 238
NlaIII	CATG	3 cut(s)	174, 341, 498
NlaIV	GGNNCC	2 cut(s)	114, 139
NmuCI	GTSAC	1 cut(s)	478
PagI	TCATGA	1 cut(s)	494
PasI	CCCWGGG	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	32, 156, 320, 353
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	349
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	242, 436
PspGI	CCWGG	2 cut(s)	242, 436
PspN4I	GGNNCC	2 cut(s)	114, 139
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	163, 238
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	244, 438
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	5 cut(s)	42, 133, 289, 313, 462
SfcI	CTRYAG	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	16, 295, 347
SsiI	CCGC	2 cut(s)	96, 200
SspDI	GGCGCC	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	242, 436
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	87, 103
TasI	AATT	3 cut(s)	16, 295, 347
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	4 cut(s)	32, 156, 320, 353
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	59, 254
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.