Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

23417021 .. 23432398

Gene Structure 15378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCTACAGCTTTCACCCCCTGTCCTTTATTTGAGAAACGTCGCAGGTTACGTAGGGTTGCTGTTCCTAATAGTCAAGCACTGTCTCTCCTTGGCCGGGATCTTCGTGAGGCTCATCTCCAGGTGATTTTAGGGAGTGGGGGATATCGATCAGAGAATGCTAATGTCACTAATGCAGCTACTGATCCATTCCTGTCATCACTTATTTTGAATTTCCCTGCATCAGGAGCAGATGAAATTTCAAAATCTCTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGTACACTGCTCCAGTTTCTCAAGAATGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAATTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGTTGAGAAGAAGCTGCAGAGAAGAGTTTTGGATAGACGGCTGCAGAGAAGGTGCCAAGAAACGAGGCCAAGTTTGCACTTTGCCTTCATCACCCACAAAGAAATCTGAATTAAGCTCAAGCAATATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

223

Amino Acids

24.11

Weight (kDa)

8.87

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Di19_C	PF14571	28 - 98	5.3e-16	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	513
Acc36I	ACCTGC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	452
AclWI	GGATC	3 cut(s)	108, 179, 314
AcoI	YGGCCR	2 cut(s)	94, 511
AcsI	RAATTY	2 cut(s)	211, 237
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	97, 224, 452
AgsI	TTSAA	3 cut(s)	211, 243, 492
AjnI	CCWGG	3 cut(s)	120, 323, 517
AluBI	AGCT	5 cut(s)	11, 179, 392, 552, 654
AluI	AGCT	5 cut(s)	11, 179, 392, 552, 654
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	108, 179, 314
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	94, 511, 604
ApeKI	GCWGC	3 cut(s)	176, 552, 579
ApoI	RAATTY	2 cut(s)	211, 237
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	7, 136, 621
BanI	GGYRCC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	188, 539, 566
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	3 cut(s)	402, 498, 592
BciT130I	CCWGG	3 cut(s)	122, 325, 519
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	3 cut(s)	6, 553, 580
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	177, 553, 580
BlsI	GCNGC	3 cut(s)	178, 554, 581
Bme1390I	CCNGG	4 cut(s)	98, 122, 325, 519
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	4 cut(s)	98, 122, 325, 519
BmsI	GCATC	1 cut(s)	230
BpmI	CTGGAG	3 cut(s)	104, 279, 384
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	288, 640
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	148
BsaJI	CCNNGG	3 cut(s)	91, 323, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 224, 452
Bse1I	ACTGG	2 cut(s)	296, 367
Bse8I	GATNNNNATC	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	122, 325, 519
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	91, 323, 324
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	148
BseLI	CCNNNNNNNGG	3 cut(s)	97, 224, 452
BseMII	CTCAG	3 cut(s)	255, 427, 551
BseNI	ACTGG	2 cut(s)	296, 367
BseXI	GCAGC	3 cut(s)	188, 539, 566
BshFI	GGCC	3 cut(s)	96, 513, 606
BshNI	GGYRCC	1 cut(s)	590
BshVI	ATCGAT	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	97, 224, 452
BsmAI	GTCTC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	163, 314
BsnI	GGCC	3 cut(s)	96, 513, 606
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	100, 149, 184, 319
BspANI	GGCC	3 cut(s)	96, 513, 606
BspCNI	CTCAG	3 cut(s)	256, 426, 550
BspDI	ATCGAT	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	2 cut(s)	557, 584
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	108, 179, 314
BspT107I	GGYRCC	1 cut(s)	590
BsrI	ACTGG	2 cut(s)	296, 367
BssECI	CCNNGG	3 cut(s)	91, 323, 324
BssMI	GATC	4 cut(s)	100, 149, 184, 319
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	122, 325, 519
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	264, 413, 537
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	4 cut(s)	103, 152, 187, 322
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	100, 149, 184, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 612
BstNI	CCWGG	3 cut(s)	122, 325, 519
BstSCI	CCNGG	4 cut(s)	96, 120, 323, 517
BstSFI	CTRYAG	3 cut(s)	6, 553, 580
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	188, 539, 566
BstX2I	RGATCY	2 cut(s)	100, 319
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	2 cut(s)	100, 319
Bsu15I	ATCGAT	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	96, 513, 606
BsuTUI	ATCGAT	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	446
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	80, 288
BveI	ACCTGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	286
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	264, 413, 537
DpnI	GATC	4 cut(s)	102, 151, 186, 321
DpnII	GATC	4 cut(s)	100, 149, 184, 319
DrdI	GACNNNNNNGTC	1 cut(s)	513
DseDI	GACNNNNNNGTC	1 cut(s)	513
EaeI	YGGCCR	2 cut(s)	94, 511
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco105I	TACGTA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	120, 323, 517
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaiI	YATR	3 cut(s)	348, 468, 665
Fnu4HI	GCNGC	3 cut(s)	177, 553, 580
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	177, 553, 580
GluI	GCNGC	3 cut(s)	177, 553, 580
GsuI	CTGGAG	3 cut(s)	104, 279, 384
HaeIII	GGCC	3 cut(s)	96, 513, 606
HapII	CCGG	1 cut(s)	97
HinfI	GANTC	3 cut(s)	401, 422, 434
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	3 cut(s)	7, 136, 621
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	154, 646
Hpy188III	TCNNGA	5 cut(s)	107, 225, 305, 453, 504
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	581, 633
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	2 cut(s)	40, 52
HpyCH4V	TGCA	8 cut(s)	176, 221, 278, 353, 555, 582, 615, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 612
HpyF3I	CTNAG	3 cut(s)	264, 413, 537
HpySE526I	ACGT	2 cut(s)	40, 52
Kzo9I	GATC	4 cut(s)	100, 149, 184, 319
LmnI	GCTCC	3 cut(s)	227, 298, 529
Lsp1109I	GCAGC	3 cut(s)	188, 539, 566
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	40, 52
MaeIII	GTNAC	4 cut(s)	48, 166, 253, 532
MalI	GATC	4 cut(s)	102, 151, 186, 321
MboI	GATC	4 cut(s)	100, 149, 184, 319
MboII	GAAGA	5 cut(s)	95, 480, 492, 558, 572
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	2 cut(s)	100, 319
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	6 cut(s)	211, 237, 376, 428, 440, 647
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	103, 259, 359, 393, 460, 469, 596
MseI	TTAA	1 cut(s)	650
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	4 cut(s)	98, 122, 325, 519
MunI	CAATTG	1 cut(s)	428
Mva1269I	GAATGC	2 cut(s)	163, 314
MvaI	CCWGG	3 cut(s)	122, 325, 519
MwoI	GCNNNNNNNGC	2 cut(s)	227, 612
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	100, 149, 184, 319
NlaIV	GGNNCC	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	166
PasI	CCCWGGG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	2 cut(s)	163, 314
PfeI	GAWTC	2 cut(s)	401, 434
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	178, 554, 581
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	120, 323, 517
PspGI	CCWGG	3 cut(s)	120, 323, 517
PspN4I	GGNNCC	1 cut(s)	592
PstI	CTGCAG	2 cut(s)	557, 584
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	100, 319
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	3 cut(s)	177, 553, 580
Sau3AI	GATC	4 cut(s)	100, 149, 184, 319
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	4 cut(s)	98, 122, 325, 519
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	3 cut(s)	6, 553, 580
SmlI	CTYRAG	2 cut(s)	303, 655
SmoI	CTYRAG	2 cut(s)	303, 655
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	6 cut(s)	211, 237, 376, 428, 440, 647
StyD4I	CCNGG	4 cut(s)	96, 120, 323, 517
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	2 cut(s)	43, 55
TaqI	TCGA	1 cut(s)	148
TasI	AATT	6 cut(s)	211, 237, 376, 428, 440, 647
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	401, 434
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	2 cut(s)	87, 295
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	176, 552, 579
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	249, 335, 615
TspRI	CASTG	2 cut(s)	87, 295
Van91I	CCANNNNNTGG	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	2 cut(s)	211, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.