Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

43860512 .. 43863367

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTAAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTATGGAGAAGAGGTTCCATTCTATGCTGCCGCTGATGAGAGGATTATTGAAATGCAGGGAGAAATCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTAGTGTCTCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTTTTTGAGAAAACTTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTAACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCATGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTACTCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGAAAGGAGTATTGAATTTATTAGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGTGGCTCAACAACTGATTCAGATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGTTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

329

Amino Acids

35.64

Weight (kDa)

5.85

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	34 - 100	7.4e-10	KH domain
KH_1	PF00013	207 - 270	5.8e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	770
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	183, 234
AclWI	GGATC	2 cut(s)	160, 389
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	2 cut(s)	633, 686
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	181, 723
AfiI	CCNNNNNNNGG	2 cut(s)	109, 527
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	25, 254, 567, 671, 686
AjnI	CCWGG	2 cut(s)	398, 592
AleI	CACNNNNGTG	1 cut(s)	869
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	287, 467, 816
AluI	AGCT	3 cut(s)	287, 467, 816
Alw21I	GWGCWC	2 cut(s)	282, 601
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	160, 389
AoxI	GGCC	2 cut(s)	586, 895
ApeKI	GCWGC	4 cut(s)	77, 185, 230, 926
ApoI	RAATTY	2 cut(s)	633, 686
AseI	ATTAAT	2 cut(s)	132, 158
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	770
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
Bbv12I	GWGCWC	2 cut(s)	282, 601
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	4 cut(s)	64, 172, 217, 913
BccI	CCATC	4 cut(s)	107, 529, 847, 958
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	2 cut(s)	400, 594
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	290, 988
BisI	GCNGC	5 cut(s)	78, 186, 231, 234, 927
BlsI	GCNGC	5 cut(s)	79, 187, 232, 235, 928
Bme1390I	CCNGG	2 cut(s)	400, 594
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	3 cut(s)	219, 709, 772
BmrFI	CCNGG	2 cut(s)	400, 594
BmsI	GCATC	1 cut(s)	125
BpmI	CTGGAG	3 cut(s)	102, 354, 459
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	398, 399, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 527
Bse1I	ACTGG	2 cut(s)	371, 442
Bse21I	CCTNAGG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	400, 594
BseDI	CCNNGG	3 cut(s)	398, 399, 898
BseGI	GGATG	5 cut(s)	10, 99, 116, 521, 969
BseLI	CCNNNNNNNGG	2 cut(s)	109, 527
BseMII	CTCAG	4 cut(s)	302, 502, 626, 642
BseNI	ACTGG	2 cut(s)	371, 442
BseXI	GCAGC	4 cut(s)	64, 172, 217, 913
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	588, 897
BshNI	GGYRCC	1 cut(s)	770
BsiHKAI	GWGCWC	2 cut(s)	282, 601
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	2 cut(s)	109, 527
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	588, 897
Bsp1286I	GDGCHC	2 cut(s)	282, 601
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	4 cut(s)	152, 328, 394, 984
BspACI	CCGC	2 cut(s)	183, 234
BspANI	GGCC	2 cut(s)	588, 897
BspCNI	CTCAG	4 cut(s)	303, 501, 625, 643
BspLI	GGNNCC	3 cut(s)	219, 709, 772
BspPI	GGATC	2 cut(s)	160, 389
BspT107I	GGYRCC	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	371, 442
BssECI	CCNNGG	3 cut(s)	398, 399, 898
BssMI	GATC	4 cut(s)	152, 328, 394, 984
BssT1I	CCWWGG	1 cut(s)	898
Bst2UI	CCWGG	2 cut(s)	400, 594
Bst4CI	ACNGT	2 cut(s)	721, 757
Bst6I	CTCTTC	2 cut(s)	207, 933
BstAUI	TGTACA	1 cut(s)	721
BstC8I	GCNNGC	2 cut(s)	55, 971
BstDEI	CTNAG	5 cut(s)	45, 311, 488, 612, 651
BstF5I	GGATG	5 cut(s)	10, 99, 116, 521, 969
BstKTI	GATC	4 cut(s)	155, 331, 397, 987
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	4 cut(s)	152, 328, 394, 984
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
BstNI	CCWGG	2 cut(s)	400, 594
BstSCI	CCNGG	2 cut(s)	398, 592
BstV1I	GCAGC	4 cut(s)	64, 172, 217, 913
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	588, 897
BtsCI	GGATG	5 cut(s)	10, 99, 116, 521, 969
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 762
Cac8I	GCNNGC	2 cut(s)	55, 971
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	2 cut(s)	180, 722
CviAII	CATG	1 cut(s)	494
CviQI	GTAC	2 cut(s)	180, 722
DdeI	CTNAG	5 cut(s)	45, 311, 488, 612, 651
DpnI	GATC	4 cut(s)	154, 330, 396, 986
DpnII	GATC	4 cut(s)	152, 328, 394, 984
DrdI	GACNNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	207, 933
EarI	CTCTTC	2 cut(s)	207, 933
Eco130I	CCWWGG	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	398, 592
EcoT14I	CCWWGG	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	1 cut(s)	497
FaiI	YATR	9 cut(s)	170, 207, 228, 333, 423, 495, 543, 648, 936
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	5 cut(s)	78, 186, 231, 234, 927
FokI	GGATG	5 cut(s)	17, 86, 103, 508, 976
Fsp4HI	GCNGC	5 cut(s)	78, 186, 231, 234, 927
FspBI	CTAG	2 cut(s)	290, 988
GluI	GCNGC	5 cut(s)	78, 186, 231, 234, 927
GsuI	CTGGAG	3 cut(s)	102, 354, 459
HaeIII	GGCC	2 cut(s)	588, 897
Hin1II	CATG	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	4 cut(s)	476, 497, 509, 805
HpaI	GTTAAC	1 cut(s)	717
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	2 cut(s)	615, 810
Hpy188III	TCNNGA	4 cut(s)	290, 380, 528, 579
Hpy8I	GTNNAC	1 cut(s)	717
HpyCH4III	ACNGT	2 cut(s)	721, 757
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	53, 89, 259, 428, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
HpyF3I	CTNAG	5 cut(s)	45, 311, 488, 612, 651
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	152, 328, 394, 984
LmnI	GCTCC	3 cut(s)	373, 604, 707
Lsp1109I	GCAGC	4 cut(s)	64, 172, 217, 913
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	290, 988
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	154, 330, 396, 986
MboI	GATC	4 cut(s)	152, 328, 394, 984
MboII	GAAGA	6 cut(s)	224, 332, 555, 567, 683, 950
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	282, 601
MluCI	AATT	7 cut(s)	133, 138, 451, 503, 633, 686, 750
MlyI	GAGTC	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	5 cut(s)	132, 137, 158, 272, 716
MslI	CAYNNNNRTG	1 cut(s)	869
MspA1I	CMGCKG	2 cut(s)	185, 236
MspR9I	CCNGG	2 cut(s)	400, 594
MunI	CAATTG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	400, 594
MwoI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
NdeII	GATC	4 cut(s)	152, 328, 394, 984
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	3 cut(s)	219, 709, 772
OliI	CACNNNNGTG	1 cut(s)	869
PasI	CCCWGGG	1 cut(s)	399
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	476, 509, 805
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	79, 187, 232, 235, 928
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshBI	ATTAAT	2 cut(s)	132, 158
Psp6I	CCWGG	2 cut(s)	398, 592
PspGI	CCWGG	2 cut(s)	398, 592
PspN4I	GGNNCC	3 cut(s)	219, 709, 772
PspPI	GGNCC	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	181, 723
RsaNI	GTAC	2 cut(s)	180, 722
RseI	CAYNNNNRTG	1 cut(s)	869
SaqAI	TTAA	5 cut(s)	132, 137, 158, 272, 716
SatI	GCNGC	5 cut(s)	78, 186, 231, 234, 927
Sau3AI	GATC	4 cut(s)	152, 328, 394, 984
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	400, 594
SduI	GDGCHC	2 cut(s)	282, 601
SfaNI	GCATC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	869
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	7 cut(s)	133, 138, 451, 503, 633, 686, 750
SsiI	CCGC	2 cut(s)	183, 234
SspI	AATATT	1 cut(s)	920
SspMI	CTAG	2 cut(s)	290, 988
StyD4I	CCNGG	2 cut(s)	398, 592
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	2 cut(s)	721, 757
TaiI	ACGT	1 cut(s)	31
TasI	AATT	7 cut(s)	133, 138, 451, 503, 633, 686, 750
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	476, 509, 805
Tru1I	TTAA	5 cut(s)	132, 137, 158, 272, 716
Tru9I	TTAA	5 cut(s)	132, 137, 158, 272, 716
TscAI	CASTG	2 cut(s)	370, 762
TseI	GCWGC	4 cut(s)	77, 185, 230, 926
TspDTI	ATGAA	3 cut(s)	410, 762, 951
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	370, 762
Van91I	CCANNNNNTGG	1 cut(s)	527
VspI	ATTAAT	2 cut(s)	132, 158
XapI	RAATTY	2 cut(s)	633, 686
XbaI	TCTAGA	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	290, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.