Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

22572138 .. 22583681

Gene Structure 11544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCACTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGAAGAGGTTCCATTCTATGCTGCCGCTGATGAGAGGATTATTGAAATGCAGGGAGAAACCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTAGTGTCTCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTTTTTGAGAAAACTTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCATGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAAGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGAAGAAGCAGAAATGTGAACTCAAACTGAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

216

Amino Acids

23.23

Weight (kDa)

7.79

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	34 - 100	7.2e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	183, 234
AclWI	GGATC	2 cut(s)	160, 389
AcoI	YGGCCR	1 cut(s)	586
AfaI	GTAC	2 cut(s)	181, 647
AfiI	CCNNNNNNNGG	2 cut(s)	109, 527
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	25, 254, 567, 579
AjnI	CCWGG	2 cut(s)	398, 592
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	287, 467
AluI	AGCT	2 cut(s)	287, 467
Alw21I	GWGCWC	2 cut(s)	282, 601
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	160, 389
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	3 cut(s)	77, 185, 230
AseI	ATTAAT	2 cut(s)	132, 158
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
Bbv12I	GWGCWC	2 cut(s)	282, 601
BbvI	GCAGC	3 cut(s)	64, 172, 217
BccI	CCATC	2 cut(s)	107, 529
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	2 cut(s)	400, 594
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	4 cut(s)	78, 186, 231, 234
BlsI	GCNGC	4 cut(s)	79, 187, 232, 235
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	400, 594
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	400, 594
BmsI	GCATC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	4 cut(s)	102, 228, 354, 459
BpuEI	CTTGAG	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	398, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 527
Bse1I	ACTGG	2 cut(s)	371, 442
Bse21I	CCTNAGG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	400, 594
BseDI	CCNNGG	2 cut(s)	398, 399
BseGI	GGATG	4 cut(s)	10, 99, 116, 521
BseLI	CCNNNNNNNGG	2 cut(s)	109, 527
BseMII	CTCAG	4 cut(s)	36, 302, 502, 626
BseNI	ACTGG	2 cut(s)	371, 442
BseXI	GCAGC	3 cut(s)	64, 172, 217
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	282, 601
BslI	CCNNNNNNNGG	2 cut(s)	109, 527
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	282, 601
Bsp143I	GATC	3 cut(s)	152, 328, 394
BspACI	CCGC	2 cut(s)	183, 234
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	4 cut(s)	37, 303, 501, 625
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	160, 389
BsrI	ACTGG	2 cut(s)	371, 442
BssECI	CCNNGG	2 cut(s)	398, 399
BssMI	GATC	3 cut(s)	152, 328, 394
Bst2UI	CCWGG	2 cut(s)	400, 594
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	4 cut(s)	45, 311, 488, 612
BstF5I	GGATG	4 cut(s)	10, 99, 116, 521
BstKTI	GATC	3 cut(s)	155, 331, 397
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	152, 328, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
BstNI	CCWGG	2 cut(s)	400, 594
BstSCI	CCNGG	2 cut(s)	398, 592
BstV1I	GCAGC	3 cut(s)	64, 172, 217
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	4 cut(s)	10, 99, 116, 521
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	180, 646
CviAII	CATG	1 cut(s)	494
CviJI	RGCY	6 cut(s)	287, 404, 467, 492, 554, 588
CviKI_1	RGCY	6 cut(s)	287, 404, 467, 492, 554, 588
CviQI	GTAC	2 cut(s)	180, 646
DdeI	CTNAG	4 cut(s)	45, 311, 488, 612
DpnI	GATC	3 cut(s)	154, 330, 396
DpnII	GATC	3 cut(s)	152, 328, 394
DrdI	GACNNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	398, 592
FaeI	CATG	1 cut(s)	497
FaiI	YATR	6 cut(s)	170, 228, 333, 423, 495, 543
FatI	CATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	78, 186, 231, 234
FokI	GGATG	4 cut(s)	17, 86, 103, 508
Fsp4HI	GCNGC	4 cut(s)	78, 186, 231, 234
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	4 cut(s)	78, 186, 231, 234
GsuI	CTGGAG	4 cut(s)	102, 228, 354, 459
HaeIII	GGCC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	497
HinfI	GANTC	3 cut(s)	476, 497, 509
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	2 cut(s)	46, 615
Hpy188III	TCNNGA	5 cut(s)	207, 290, 380, 528, 579
Hpy8I	GTNNAC	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	53, 89, 259, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
HpyF3I	CTNAG	4 cut(s)	45, 311, 488, 612
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	152, 328, 394
LmnI	GCTCC	2 cut(s)	373, 604
Lsp1109I	GCAGC	3 cut(s)	64, 172, 217
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	3 cut(s)	154, 330, 396
MboI	GATC	3 cut(s)	152, 328, 394
MboII	GAAGA	5 cut(s)	224, 332, 555, 567, 628
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	282, 601
MluCI	AATT	4 cut(s)	133, 138, 451, 503
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	52, 208, 237, 306, 354, 434, 468, 535, 544
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	4 cut(s)	132, 137, 158, 272
MspA1I	CMGCKG	2 cut(s)	185, 236
MspR9I	CCNGG	2 cut(s)	400, 594
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	400, 594
MwoI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
NdeII	GATC	3 cut(s)	152, 328, 394
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	219
PasI	CCCWGGG	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	476, 509
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	79, 187, 232, 235
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshBI	ATTAAT	2 cut(s)	132, 158
Psp6I	CCWGG	2 cut(s)	398, 592
PspGI	CCWGG	2 cut(s)	398, 592
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	181, 647
RsaNI	GTAC	2 cut(s)	180, 646
SaqAI	TTAA	4 cut(s)	132, 137, 158, 272
SatI	GCNGC	4 cut(s)	78, 186, 231, 234
Sau3AI	GATC	3 cut(s)	152, 328, 394
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	400, 594
SduI	GDGCHC	2 cut(s)	282, 601
SetI	ASST	8 cut(s)	31, 219, 272, 279, 289, 312, 445, 469
SfaNI	GCATC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	4 cut(s)	133, 138, 451, 503
SsiI	CCGC	2 cut(s)	183, 234
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	398, 592
TaiI	ACGT	1 cut(s)	31
TasI	AATT	4 cut(s)	133, 138, 451, 503
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	476, 509
Tru1I	TTAA	4 cut(s)	132, 137, 158, 272
Tru9I	TTAA	4 cut(s)	132, 137, 158, 272
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	3 cut(s)	77, 185, 230
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	527
VspI	ATTAAT	2 cut(s)	132, 158
XbaI	TCTAGA	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.