Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039997.1

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

182 .. 1866

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtacactgctccagtttctcaagaatgccaaccagatccctgggctgacaagtcgttgcttcatactgcaactcaaactggaggtggcactaattatcctctcacagctacacgggaatctttgtttctcacccatgagtcgcaattggaatcacaattcccatcctctggactttccatttatggacaagaggcttctctttcttcaatacattcttcaggacttggccgtcctggtgctcctattgttactcagattacgcaaacgatgcaaattcctctgtcttatgctgaggacattattggggttaaaggaaggagtattgaatttattcgtcgtagtagtggagccttgttaactgtacaagagagcaggggactacctgatgaaattacagtggaaataaaaggcacctcatcacaggttcaggcggctcaacaactgattcaggaagttatagcaaccagcaacaaggatcaaattccaagcagctatggcaggatggataccggattgaggtcatcctactcttcagtatcctcgccaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

184

Amino Acids

19.7

Weight (kDa)

5.13

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	2 cut(s)	32, 486
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	276, 329, 483
AcuI	CTGAAG	2 cut(s)	204, 519
AfaI	GTAC	2 cut(s)	5, 366
AfiI	CCNNNNNNNGG	2 cut(s)	170, 519
AgsI	TTSAA	2 cut(s)	210, 329
AjnI	CCWGG	2 cut(s)	41, 235
AluBI	AGCT	2 cut(s)	110, 495
AluI	AGCT	2 cut(s)	110, 495
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	32, 486
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	3 cut(s)	276, 329, 483
Asp700I	GAANNNNTTC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	2 cut(s)	172, 499
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	43, 237
BciVI	GTATCC	2 cut(s)	502, 550
BfuI	GTATCC	2 cut(s)	502, 550
BisI	GCNGC	2 cut(s)	435, 493
BlsI	GCNGC	2 cut(s)	436, 494
Bme1390I	CCNGG	2 cut(s)	43, 237
BmiI	GGNNCC	2 cut(s)	352, 415
BmrFI	CCNGG	2 cut(s)	43, 237
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	41, 42
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 519
Bse1I	ACTGG	2 cut(s)	14, 85
BseBI	CCWGG	2 cut(s)	43, 237
BseDI	CCNNGG	2 cut(s)	41, 42
BseGI	GGATG	3 cut(s)	164, 510, 524
BseLI	CCNNNNNNNGG	2 cut(s)	170, 519
BseMII	CTCAG	2 cut(s)	269, 285
BseNI	ACTGG	2 cut(s)	14, 85
BseXI	GCAGC	1 cut(s)	504
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	170, 519
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	2 cut(s)	3, 364
Bsp143I	GATC	2 cut(s)	37, 478
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	268, 286
BspLI	GGNNCC	2 cut(s)	352, 415
BspPI	GGATC	2 cut(s)	32, 486
BspT107I	GGYRCC	1 cut(s)	413
BsrGI	TGTACA	2 cut(s)	3, 364
BsrI	ACTGG	2 cut(s)	14, 85
BssECI	CCNNGG	2 cut(s)	41, 42
BssMI	GATC	2 cut(s)	37, 478
Bst2UI	CCWGG	2 cut(s)	43, 237
Bst4CI	ACNGT	2 cut(s)	364, 400
Bst6I	CTCTTC	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstAUI	TGTACA	2 cut(s)	3, 364
BstDEI	CTNAG	2 cut(s)	255, 294
BstF5I	GGATG	3 cut(s)	164, 510, 524
BstKTI	GATC	2 cut(s)	40, 481
BstMBI	GATC	2 cut(s)	37, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 498
BstNI	CCWGG	2 cut(s)	43, 237
BstSCI	CCNGG	2 cut(s)	41, 235
BstV1I	GCAGC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	502, 550
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	164, 510, 524
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	6, 405
Csp6I	GTAC	2 cut(s)	4, 365
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	7 cut(s)	47, 110, 197, 231, 353, 437, 495
CviKI_1	RGCY	7 cut(s)	47, 110, 197, 231, 353, 437, 495
CviQI	GTAC	2 cut(s)	4, 365
DdeI	CTNAG	2 cut(s)	255, 294
DpnI	GATC	2 cut(s)	39, 480
DpnII	GATC	2 cut(s)	37, 478
DrdI	GACNNNNNNGTC	1 cut(s)	231
DseDI	GACNNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	204, 519
EcoRII	CCWGG	2 cut(s)	41, 235
FaeI	CATG	1 cut(s)	140
FaiI	YATR	6 cut(s)	66, 138, 186, 291, 461, 498
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	435, 493
FokI	GGATG	3 cut(s)	151, 511, 517
Fsp4HI	GCNGC	2 cut(s)	435, 493
GluI	GCNGC	2 cut(s)	435, 493
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	4 cut(s)	119, 140, 152, 448
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	6, 360
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	23, 171, 222, 452
Hpy8I	GTNNAC	2 cut(s)	6, 360
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	364, 400
HpyCH4V	TGCA	2 cut(s)	71, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 498
HpyF3I	CTNAG	2 cut(s)	255, 294
Hsp92II	CATG	1 cut(s)	140
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	37, 478
LmnI	GCTCC	3 cut(s)	16, 247, 350
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	39, 480
MboI	GATC	2 cut(s)	37, 478
MboII	GAAGA	3 cut(s)	198, 210, 525
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	7 cut(s)	94, 146, 158, 276, 329, 393, 483
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	77, 111, 178, 187, 289, 291, 427, 513, 553
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	3 cut(s)	312, 359, 553
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	43, 237
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	2 cut(s)	43, 237
MwoI	GCNNNNNNNGC	2 cut(s)	271, 498
NdeII	GATC	2 cut(s)	37, 478
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	2 cut(s)	352, 415
PasI	CCCWGGG	1 cut(s)	42
PctI	GAATGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	119, 152, 448
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	436, 494
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	41, 235
PspGI	CCWGG	2 cut(s)	41, 235
PspN4I	GGNNCC	2 cut(s)	352, 415
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	5, 366
RsaNI	GTAC	2 cut(s)	4, 365
SaqAI	TTAA	3 cut(s)	312, 359, 553
SatI	GCNGC	2 cut(s)	435, 493
Sau3AI	GATC	2 cut(s)	37, 478
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	43, 237
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	88, 112, 388, 419, 429, 497, 524, 553
SfaNI	GCATC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	7 cut(s)	94, 146, 158, 276, 329, 393, 483
SsiI	CCGC	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	41, 235
TaaI	ACNGT	2 cut(s)	364, 400
TasI	AATT	7 cut(s)	94, 146, 158, 276, 329, 393, 483
TatI	WGTACW	2 cut(s)	3, 364
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	3 cut(s)	119, 152, 448
Tru1I	TTAA	3 cut(s)	312, 359, 553
Tru9I	TTAA	3 cut(s)	312, 359, 553
TscAI	CASTG	2 cut(s)	13, 405
TseI	GCWGC	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	53, 405
TspRI	CASTG	2 cut(s)	13, 405
Van91I	CCANNNNNTGG	1 cut(s)	170
XapI	RAATTY	3 cut(s)	276, 329, 483
XmnI	GAANNNNTTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.