Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

10138160 .. 10140646

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTGAACAGTTTATTGACTATGGGTGCATCTTCAGTACACTGCTCCAGTTTCTTAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCATTGCTTTATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGGCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGGTTCATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTAAAGGAAGGAGTATTGAATTTATTCGTCATAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTTATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTCTGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

207

Amino Acids

23.16

Weight (kDa)

6.18

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	101 - 165	5.7e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	2 cut(s)	67, 525
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	3 cut(s)	315, 368, 522
AcuI	CTGAAG	3 cut(s)	19, 239, 588
AfaI	GTAC	2 cut(s)	40, 405
AfiI	CCNNNNNNNGG	2 cut(s)	205, 558
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	8, 245, 368
AjnI	CCWGG	2 cut(s)	76, 270
AluBI	AGCT	2 cut(s)	145, 534
AluI	AGCT	2 cut(s)	145, 534
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	67, 525
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	3 cut(s)	315, 368, 522
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	207, 538
BceAI	ACGGC	2 cut(s)	155, 251
BciT130I	CCWGG	2 cut(s)	78, 272
BciVI	GTATCC	2 cut(s)	541, 619
BfrI	CTTAAG	1 cut(s)	56
BfuI	GTATCC	2 cut(s)	541, 619
BisI	GCNGC	2 cut(s)	474, 532
BlsI	GCNGC	2 cut(s)	475, 533
Bme1390I	CCNGG	2 cut(s)	78, 272
BmiI	GGNNCC	2 cut(s)	391, 454
BmrFI	CCNGG	2 cut(s)	78, 272
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	2 cut(s)	32, 137
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	76, 77
BsaWI	WCCGGW	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 558
Bse1I	ACTGG	2 cut(s)	49, 120
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	78, 272
BseDI	CCNNGG	2 cut(s)	76, 77
BseGI	GGATG	3 cut(s)	199, 549, 563
BseLI	CCNNNNNNNGG	2 cut(s)	205, 558
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	4 cut(s)	180, 304, 324, 587
BseNI	ACTGG	2 cut(s)	49, 120
BseXI	GCAGC	1 cut(s)	543
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	205, 558
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	72, 517
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	4 cut(s)	179, 303, 325, 586
BspLI	GGNNCC	2 cut(s)	391, 454
BspPI	GGATC	2 cut(s)	67, 525
BspT107I	GGYRCC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	49, 120
BssECI	CCNNGG	2 cut(s)	76, 77
BssMI	GATC	2 cut(s)	72, 517
Bst2UI	CCWGG	2 cut(s)	78, 272
Bst4CI	ACNGT	3 cut(s)	12, 403, 439
Bst6I	CTCTTC	1 cut(s)	607
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	166, 290, 333, 573
BstF5I	GGATG	3 cut(s)	199, 549, 563
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	75, 520
BstMBI	GATC	2 cut(s)	72, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 537
BstNI	CCWGG	2 cut(s)	78, 272
BstSCI	CCNGG	2 cut(s)	76, 270
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	72
BsuI	GTATCC	2 cut(s)	541, 619
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	199, 549, 563
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 444
CfoI	GCGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	39, 404
CviJI	RGCY	8 cut(s)	82, 145, 170, 232, 266, 392, 476, 534
CviKI_1	RGCY	8 cut(s)	82, 145, 170, 232, 266, 392, 476, 534
CviQI	GTAC	2 cut(s)	39, 404
DdeI	CTNAG	4 cut(s)	166, 290, 333, 573
DpnI	GATC	2 cut(s)	74, 519
DpnII	GATC	2 cut(s)	72, 517
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
Eco57I	CTGAAG	3 cut(s)	19, 239, 588
EcoRII	CCWGG	2 cut(s)	76, 270
FaiI	YATR	7 cut(s)	24, 101, 221, 330, 381, 500, 587
FaqI	GGGAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	474, 532
FokI	GGATG	3 cut(s)	186, 550, 556
Fsp4HI	GCNGC	2 cut(s)	474, 532
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	474, 532
GsuI	CTGGAG	2 cut(s)	32, 137
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	154, 187, 581
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	2 cut(s)	41, 399
Hpy188III	TCNNGA	3 cut(s)	206, 257, 491
Hpy8I	GTNNAC	2 cut(s)	41, 399
HpyAV	CCTTC	2 cut(s)	351, 606
HpyCH4III	ACNGT	3 cut(s)	12, 403, 439
HpyCH4V	TGCA	3 cut(s)	30, 106, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 537
HpyF3I	CTNAG	4 cut(s)	166, 290, 333, 573
HspAI	GCGC	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	72, 517
LmnI	GCTCC	3 cut(s)	51, 282, 389
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	74, 519
MboI	GATC	2 cut(s)	72, 517
MboII	GAAGA	4 cut(s)	25, 233, 245, 594
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	129, 181, 315, 368, 432, 522
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	57, 351, 398, 622
MslI	CAYNNNNRTG	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	78, 272
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	78, 272
MwoI	GCNNNNNNNGC	2 cut(s)	310, 537
NdeII	GATC	2 cut(s)	72, 517
NlaIV	GGNNCC	2 cut(s)	391, 454
PasI	CCCWGGG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	154, 187, 581
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	475, 533
Psp6I	CCWGG	2 cut(s)	76, 270
PspGI	CCWGG	2 cut(s)	76, 270
PspN4I	GGNNCC	2 cut(s)	391, 454
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	2 cut(s)	40, 405
RsaNI	GTAC	2 cut(s)	39, 404
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	57, 351, 398, 622
SatI	GCNGC	2 cut(s)	474, 532
Sau3AI	GATC	2 cut(s)	72, 517
ScrFI	CCNGG	2 cut(s)	78, 272
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	123, 147, 296, 427, 458, 468, 536, 563, 622
SfaNI	GCATC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	129, 181, 315, 368, 432, 522
SsiI	CCGC	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	76, 270
TaaI	ACNGT	3 cut(s)	12, 403, 439
TasI	AATT	6 cut(s)	129, 181, 315, 368, 432, 522
TatI	WGTACW	2 cut(s)	38, 403
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	154, 187, 581
Tru1I	TTAA	4 cut(s)	57, 351, 398, 622
Tru9I	TTAA	4 cut(s)	57, 351, 398, 622
TscAI	CASTG	2 cut(s)	48, 444
TseI	GCWGC	1 cut(s)	531
TspDTI	ATGAA	2 cut(s)	286, 444
TspRI	CASTG	2 cut(s)	48, 444
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	56
XapI	RAATTY	3 cut(s)	315, 368, 522
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.