RLG00000030569

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002603
Physical Location & Seq
Forward (+)
63605498 .. 63606017
520 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030569

Sequence Viewer

Length: 333 bp
ATGAGAGTTGCGCTAGGGTTTCTTGGCGGCGGCTCGGCAAAATTGGCTAGTAGAGGCGCCTCACTTCCTCTCTCTGGCTTCTTGGTGGGGGGACGTCACATCTCATTGGCGTGGTCTTTATCTGTAGGGATTGTGTTGGAGCTCCGAGTGGTCTATCGCACGAGCATGGCTTTCGTCGCCAGTGTACAAGGGGAAGCCGGGATGGCCGCGGCGGCGCTCTATGCTCTCGGGCAGACTGGATTAGGATATGATCTTGGATCTCGATTTTTGATTCTAGCTGGGCAAGTCCCGTGGCAGATAGCGGTGTCTGTGGGTGCGGCGGCCCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.16

Weight (kDa)

10.87

Isoelectric Point (pI)

23.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 209
AciI CCGC 8 cut(s) 27, 30, 207, 209, 212, 302, 317, 320
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 57, 94
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 142, 278
AluI AGCT 2 cut(s) 142, 278
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 265
Ama87I CYCGRG 2 cut(s) 227, 324
AoxI GGCC 2 cut(s) 204, 321
AspLEI GCGC 3 cut(s) 13, 59, 217
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 3 cut(s) 199, 325, 326
AvaI CYCGRG 2 cut(s) 227, 324
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 3 cut(s) 199, 325, 326
BfaI CTAG 3 cut(s) 14, 48, 275
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 2 cut(s) 60, 218
BglI GCCNNNNNGGC 2 cut(s) 203, 212
BisI GCNGC 7 cut(s) 28, 31, 207, 210, 213, 318, 321
BlsI GCNGC 7 cut(s) 29, 32, 208, 211, 214, 319, 322
Bme1390I CCNGG 3 cut(s) 199, 325, 326
BmeT110I CYCGRG 2 cut(s) 227, 324
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 3 cut(s) 199, 325, 326
BpuMI CCSGG 3 cut(s) 199, 325, 326
BsaHI GRCGYC 2 cut(s) 57, 94
BsaJI CCNNGG 3 cut(s) 207, 290, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 180, 241
BseDI CCNNGG 3 cut(s) 207, 290, 324
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 180, 241
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 2 cut(s) 206, 323
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 2 cut(s) 227, 324
BsiSI CCGG 2 cut(s) 198, 325
BslFI GGGAC 2 cut(s) 105, 272
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 105, 272
BsnI GGCC 2 cut(s) 206, 323
BsoBI CYCGRG 2 cut(s) 227, 324
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 250, 257
BspACI CCGC 8 cut(s) 27, 30, 207, 209, 212, 302, 317, 320
BspANI GGCC 2 cut(s) 206, 323
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 184
BsrI ACTGG 2 cut(s) 180, 241
BssECI CCNNGG 3 cut(s) 207, 290, 324
BssMI GATC 2 cut(s) 250, 257
BssNI GRCGYC 2 cut(s) 57, 94
BssSI CACGAG 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 160
BstACI GRCGYC 2 cut(s) 57, 94
BstAUI TGTACA 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 207, 290
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 60, 218
BstHHI GCGC 3 cut(s) 13, 59, 217
BstKTI GATC 2 cut(s) 253, 260
BstMBI GATC 2 cut(s) 250, 257
BstMWI GCNNNNNNNGC 5 cut(s) 44, 176, 203, 212, 221
BstSCI CCNGG 3 cut(s) 197, 323, 324
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 206, 323
BtgI CCRYGG 2 cut(s) 207, 290
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 187
CfoI GCGC 3 cut(s) 13, 59, 217
Cfr13I GGNCC 1 cut(s) 322
Cfr42I CCGCGG 1 cut(s) 210
Cfr9I CCCGGG 1 cut(s) 324
Csp6I GTAC 1 cut(s) 185
CspCI CAANNNNNGTGG 2 cut(s) 272, 307
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 33, 47, 78, 142, 170, 197, 206, 278, 323
CviKI_1 RGCY 9 cut(s) 33, 47, 78, 142, 170, 197, 206, 278, 323
CviQI GTAC 1 cut(s) 185
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 252, 259
DpnII GATC 2 cut(s) 250, 257
EaeI YGGCCR 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 2 cut(s) 227, 324
EcoICRI GAGCTC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 222, 249
FaqI GGGAC 2 cut(s) 105, 272
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 7 cut(s) 28, 31, 207, 210, 213, 318, 321
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 7 cut(s) 28, 31, 207, 210, 213, 318, 321
FspBI CTAG 3 cut(s) 14, 48, 275
GlaI GCGC 3 cut(s) 12, 58, 216
GluI GCNGC 7 cut(s) 28, 31, 207, 210, 213, 318, 321
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 2 cut(s) 60, 218
HaeIII GGCC 2 cut(s) 206, 323
HapII CCGG 2 cut(s) 198, 325
HhaI GCGC 3 cut(s) 13, 59, 217
Hin1I GRCGYC 2 cut(s) 57, 94
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 3 cut(s) 11, 57, 215
HinP1I GCGC 3 cut(s) 11, 57, 215
HinfI GANTC 1 cut(s) 271
HpaII CCGG 2 cut(s) 198, 325
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 176, 203, 212, 221
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 2 cut(s) 57, 94
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 3 cut(s) 11, 57, 215
KasI GGCGCC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 2 cut(s) 250, 257
LmnI GCTCC 2 cut(s) 139, 147
LpnPI CCDG 5 cut(s) 60, 193, 211, 222, 264
MaeI CTAG 3 cut(s) 14, 48, 275
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 252, 259
MboI GATC 2 cut(s) 250, 257
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 47, 70, 78
MslI CAYNNNNRTG 2 cut(s) 109, 164
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 198, 325
MspR9I CCNGG 3 cut(s) 199, 325, 326
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 5 cut(s) 44, 176, 203, 212, 221
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 3 cut(s) 199, 325, 326
NdeII GATC 2 cut(s) 250, 257
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 7 cut(s) 29, 32, 208, 211, 214, 319, 322
PluTI GGCGCC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 2 cut(s) 109, 164
SacI GAGCTC 1 cut(s) 144
SacII CCGCGG 1 cut(s) 210
SatI GCNGC 7 cut(s) 28, 31, 207, 210, 213, 318, 321
Sau3AI GATC 2 cut(s) 250, 257
Sau96I GGNCC 1 cut(s) 322
ScrFI CCNGG 3 cut(s) 199, 325, 326
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 97, 144, 280
SfcI CTRYAG 1 cut(s) 123
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SmaI CCCGGG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 109, 164
Sse9I AATT 1 cut(s) 41
SsiI CCGC 8 cut(s) 27, 30, 207, 209, 212, 302, 317, 320
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 14, 48, 275
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 197, 323, 324
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 184
TauI GCSGC 7 cut(s) 30, 33, 209, 212, 215, 320, 323
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspMI CCCGGG 1 cut(s) 324
TspRI CASTG 1 cut(s) 187
XmaI CCCGGG 1 cut(s) 324
XspI CTAG 3 cut(s) 14, 48, 275
ZraI GACGTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.