Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

45016580 .. 45017203

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAAACAGAGCAAATTCCTCTGTCTTATGCAGAGGACATTATTGGGGTTGAAGGGAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAATTATAGCAACTAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGAGCTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

107

Amino Acids

11.56

Weight (kDa)

4.39

Isoelectric Point (pI)

70.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	5 - 65	8.6e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	15, 68, 222
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	53, 68
AluBI	AGCT	2 cut(s)	234, 261
AluI	AGCT	2 cut(s)	234, 261
Alw21I	GWGCWC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	3 cut(s)	15, 68, 222
Asp700I	GAANNNNTTC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	238
BciVI	GTATCC	2 cut(s)	241, 319
BfaI	CTAG	1 cut(s)	207
BfuI	GTATCC	2 cut(s)	241, 319
BisI	GCNGC	2 cut(s)	174, 232
BlsI	GCNGC	2 cut(s)	175, 233
BmiI	GGNNCC	2 cut(s)	91, 154
BsaWI	WCCGGW	1 cut(s)	251
BseGI	GGATG	2 cut(s)	249, 263
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	91, 154
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	103
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	103, 139
Bst6I	CTCTTC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	249, 263
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 237
BstV1I	GCAGC	1 cut(s)	243
BsuI	GTATCC	2 cut(s)	241, 319
BtsCI	GGATG	2 cut(s)	249, 263
BtsIMutI	CAGTG	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	104
CviJI	RGCY	4 cut(s)	92, 176, 234, 261
CviKI_1	RGCY	4 cut(s)	92, 176, 234, 261
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	263
FaiI	YATR	4 cut(s)	30, 200, 237, 287
FaqI	GGGAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	174, 232
FokI	GGATG	2 cut(s)	250, 256
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	174, 232
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	174, 232
HapII	CCGG	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	187, 281
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	47, 306
HpyCH4III	ACNGT	2 cut(s)	103, 139
HpyCH4V	TGCA	2 cut(s)	4, 32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 237
HpyF3I	CTNAG	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	100, 138, 149, 155, 176, 226, 265
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	207
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	15, 68, 132, 195, 222
MnlI	CCTC	6 cut(s)	28, 30, 51, 166, 310, 322
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	2 cut(s)	98, 322
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	10, 237
NdeII	GATC	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	91, 154
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	187, 281
PkrI	GCNGC	2 cut(s)	175, 233
Psp124BI	GAGCTC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	91, 154
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	98, 322
SatI	GCNGC	2 cut(s)	174, 232
Sau3AI	GATC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	127, 158, 168, 236, 263, 322
Sse9I	AATT	5 cut(s)	15, 68, 132, 195, 222
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	103, 139
TasI	AATT	5 cut(s)	15, 68, 132, 195, 222
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	187, 281
Tru1I	TTAA	2 cut(s)	98, 322
Tru9I	TTAA	2 cut(s)	98, 322
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	15, 68, 222
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.