Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

63523656 .. 63536911

Gene Structure 13256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030564

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGAGAGTTGCGCTAGGGTTTCTTGGCGGCGGCTCGGCAAAATTGGCTAGTAGAGGCGCCTCACTTCCACTCTCTGGCTTCTTGGTGGGGGACGTCACATCTCATTGGCGTGGGTTGGAGCTCCGAGTGGTCTATCGCACGAGCATGGCTTTCGTCGCCAGTGTACAAGGGGAGGTTGGGATGGCCGTGGCGGCGCTCTATGCGCTCGGGCAGACTGGATTGGGATATGATCTTGGATCTCAATTTTTGATTCTAGCTGGGCAAGTCCCGTGGCAGATCGCGGTGTCTGTGGGTGCGGCGGCCCGGGTTCGAGAGACCCTTGGTCGACTTGGAGGTGTGCCTGGCTGTGGCTGGGTGTCCATAACAATTGGAACCCTACGGGGCCTCGAGCTTGGGCTCTTCCGTTTGGGCACCTTAAGGCTAACTGTTTGGGCTGCTTGGATGATGGTTTTGGGACCTGTCCCTAGGCCAAGTTTGGTGTTGTTTTGCTCTTTGCAACGGCACCAAGGATTCAAGTTGATTTTGCTTCCTCCAAAACCCTTTTCAACTCTTCACAGTTTGCCCTCCAAAGCTTTTTGTCTGAGCTCGTTGAAGGACAAGGTTTATAGGATCTTCTGCAGGGAAAAGCGTAAGGTCGCCGGTAGAAAGGGTGTCTATGTTGAGAATCGGTGCTCGGATAAAATCACTCAGCTCACGAATAATGTCTACGTCTGTCGCTCTGGATCAGCTGCAGATTCTCAGGTTGTTTCTGACTATGTAAGGCACTTTCTTCATCAGCACACCATTCAGCTATGGCAGCCTGCTACTGTCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGCGGCATAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGATGAAGCGGAGCTTACAAATGAGCCACATATGTCTCATGGCATTGTCGATGTTGATTACAAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCAGAGCGAGCAAGTATTCCAGAAACAGCGAAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCTACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGTGTTCAAGTCTTATCCTTTTTTCTCCAATGCAGAGTATAATTATCATGTAGCTATTTTATGTGGTTATCACCGTTTCAAATTAGCAAGGTGTCACTTACAGAAATTTGGAACTAAAATGATTCTTGTATTTAAGTTTCCATTCTTTTCTTTTATTCCAGTATTTTCTATAACAGCTACACGGGAATCTTTGTTTCTTAGCTGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGATTATGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTATTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGGCCTTGGATTACAAGTTGTGAAATATATGGCTGCGAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

748

Amino Acids

80.72

Weight (kDa)

9.33

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	219 - 279	1.3e-07	Proteasome subunit
KH_1	PF00013	596 - 659	3.5e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1752
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	5 cut(s)	56, 410, 501, 865, 1934
AccB7I	CCANNNNNTGG	2 cut(s)	74, 1691
AccBSI	CCGCTC	1 cut(s)	1067
AccI	GTMKAC	2 cut(s)	325, 705
AccII	CGCG	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	1187
AclWI	GGATC	7 cut(s)	244, 617, 730, 1257, 1270, 1405, 2007
AcoI	YGGCCR	2 cut(s)	183, 1750
AcsI	RAATTY	4 cut(s)	1559, 1797, 1850, 2004
AcuI	CTGAAG	1 cut(s)	1725
AcvI	CACGTG	1 cut(s)	1055
AcyI	GRCGYC	3 cut(s)	57, 93, 866
AfaI	GTAC	3 cut(s)	165, 1426, 1887
AfiI	CCNNNNNNNGG	7 cut(s)	74, 347, 1187, 1202, 1354, 1691, 2040
AflII	CTTAAG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	1052
AgsI	TTSAA	9 cut(s)	514, 546, 592, 1462, 1534, 1731, 1835, 1850, 2088
AhdI	GACNNNNNGTC	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	340, 1756
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
Alw21I	GWGCWC	7 cut(s)	123, 587, 674, 1060, 1195, 1258, 1765
Alw26I	GTCTC	2 cut(s)	308, 984
Alw44I	GTGCAC	2 cut(s)	1056, 1254
AlwI	GGATC	7 cut(s)	244, 617, 730, 1257, 1270, 1405, 2007
AlwNI	CAGNNNCTG	1 cut(s)	1124
Ama87I	CYCGRG	3 cut(s)	206, 303, 386
Aor13HI	TCCGGA	1 cut(s)	1187
AoxI	GGCC	6 cut(s)	183, 300, 382, 467, 1750, 2149
ApaLI	GTGCAC	2 cut(s)	1056, 1254
ApeKI	GCWGC	7 cut(s)	434, 728, 796, 1322, 1430, 2013, 2180
ApoI	RAATTY	4 cut(s)	1559, 1797, 1850, 2004
AseI	ATTAAT	2 cut(s)	1377, 1403
Asp700I	GAANNNNTTC	1 cut(s)	1854
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	5 cut(s)	13, 59, 196, 205, 868
AspS9I	GGNCC	4 cut(s)	301, 382, 455, 1205
AsuC2I	CCSGG	2 cut(s)	304, 305
AsuHPI	GGTGA	1 cut(s)	1517
AvaI	CYCGRG	3 cut(s)	206, 303, 386
AvaII	GGWCC	2 cut(s)	455, 1205
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	3 cut(s)	413, 1060, 1258
BamHI	GGATCC	1 cut(s)	1262
BanI	GGYRCC	5 cut(s)	56, 410, 501, 865, 1934
BanII	GRGCYC	3 cut(s)	123, 399, 587
BarI	GAAGNNNNNNTAC	2 cut(s)	1417, 1449
BauI	CACGAG	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	1055
Bbv12I	GWGCWC	7 cut(s)	123, 587, 674, 1060, 1195, 1258, 1765
BbvCI	CCTCAGC	1 cut(s)	1815
BbvI	GCAGC	7 cut(s)	421, 715, 808, 1309, 1417, 2025, 2167
BccI	CCATC	7 cut(s)	175, 439, 1352, 1693, 2020, 2125, 2212
BceAI	ACGGC	3 cut(s)	170, 515, 1737
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	342, 1758
BciVI	GTATCC	1 cut(s)	2023
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	2 cut(s)	304, 305
BcoDI	GTCTC	2 cut(s)	308, 984
BfaI	CTAG	6 cut(s)	14, 48, 254, 465, 2198, 2242
BfmI	CTRYAG	2 cut(s)	616, 729
BfoI	RGCGCY	3 cut(s)	60, 197, 869
BfrI	CTTAAG	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	2023
BglI	GCCNNNNNGGC	1 cut(s)	191
BlnI	CCTAGG	1 cut(s)	464
Bme1390I	CCNGG	4 cut(s)	304, 305, 342, 1758
Bme18I	GGWCC	2 cut(s)	455, 1205
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmeT110I	CYCGRG	3 cut(s)	206, 303, 386
BmgT120I	GGNCC	4 cut(s)	301, 382, 455, 1205
BmrFI	CCNGG	4 cut(s)	304, 305, 342, 1758
BmsI	GCATC	1 cut(s)	1370
BpmI	CTGGAG	3 cut(s)	877, 1347, 1473
Bpu10I	CCTNAGC	1 cut(s)	1815
BpuMI	CCSGG	2 cut(s)	304, 305
BsaAI	YACGTR	1 cut(s)	1055
BsaHI	GRCGYC	3 cut(s)	57, 93, 866
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	8 cut(s)	186, 269, 303, 319, 464, 505, 942, 2152
BsaWI	WCCGGW	3 cut(s)	1187, 1238, 2033
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 347, 1187, 1202, 1354, 1691, 2040
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	4 cut(s)	159, 220, 894, 1613
BseAI	TCCGGA	1 cut(s)	1187
BseBI	CCWGG	2 cut(s)	342, 1758
BseDI	CCNNGG	8 cut(s)	186, 269, 303, 319, 464, 505, 942, 2152
BseGI	GGATG	9 cut(s)	186, 447, 952, 1344, 1361, 1685, 2031, 2045, 2223
BseLI	CCNNNNNNNGG	7 cut(s)	74, 347, 1187, 1202, 1354, 1691, 2040
BseMII	CTCAG	6 cut(s)	572, 701, 752, 1790, 1806, 2069
BseNI	ACTGG	4 cut(s)	159, 220, 894, 1613
BseSI	GKGCMC	3 cut(s)	413, 1060, 1258
BseXI	GCAGC	7 cut(s)	421, 715, 808, 1309, 1417, 2025, 2167
BseYI	CCCAGC	2 cut(s)	257, 351
BsgI	GTGCAG	1 cut(s)	1317
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	6 cut(s)	185, 302, 384, 469, 1752, 2151
BshNI	GGYRCC	5 cut(s)	56, 410, 501, 865, 1934
BsiHKAI	GWGCWC	7 cut(s)	123, 587, 674, 1060, 1195, 1258, 1765
BsiHKCI	CYCGRG	3 cut(s)	206, 303, 386
BsiSI	CCGG	5 cut(s)	304, 639, 1188, 1239, 2034
BslFI	GGGAC	7 cut(s)	104, 251, 446, 468, 1049, 1191, 1914
BslI	CCNNNNNNNGG	7 cut(s)	74, 347, 1187, 1202, 1354, 1691, 2040
BsmAI	GTCTC	2 cut(s)	308, 984
BsmFI	GGGAC	7 cut(s)	104, 251, 446, 468, 1049, 1191, 1914
BsmI	GAATGC	1 cut(s)	1334
BsnI	GGCC	6 cut(s)	185, 302, 384, 469, 1752, 2151
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	3 cut(s)	206, 303, 386
Bsp1286I	GDGCHC	9 cut(s)	123, 399, 413, 587, 674, 1060, 1195, 1258, 1765
Bsp13I	TCCGGA	1 cut(s)	1187
Bsp1407I	TGTACA	2 cut(s)	163, 1885
BspANI	GGCC	6 cut(s)	185, 302, 384, 469, 1752, 2151
BspCNI	CTCAG	6 cut(s)	573, 700, 751, 1789, 1807, 2068
BspEI	TCCGGA	1 cut(s)	1187
BspFNI	CGCG	1 cut(s)	281
BspMAI	CTGCAG	2 cut(s)	620, 733
BspPI	GGATC	7 cut(s)	244, 617, 730, 1257, 1270, 1405, 2007
BspQI	GCTCTTC	2 cut(s)	404, 2187
BspT107I	GGYRCC	5 cut(s)	56, 410, 501, 865, 1934
BspTI	CTTAAG	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	638
BsrGI	TGTACA	2 cut(s)	163, 1885
BsrI	ACTGG	4 cut(s)	159, 220, 894, 1613
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	8 cut(s)	186, 269, 303, 319, 464, 505, 942, 2152
BssNI	GRCGYC	3 cut(s)	57, 93, 866
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	5 cut(s)	319, 464, 505, 942, 2152
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	342, 1758
Bst4CI	ACNGT	9 cut(s)	427, 557, 808, 840, 1048, 1236, 1529, 1885, 1921
Bst6I	CTCTTC	4 cut(s)	404, 555, 2089, 2187
BstACI	GRCGYC	3 cut(s)	57, 93, 866
BstAFI	CTTAAG	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	1792
BstAUI	TGTACA	2 cut(s)	163, 1885
BstBAI	YACGTR	1 cut(s)	1055
BstC8I	GCNNGC	4 cut(s)	801, 1089, 1300, 2225
BstDEI	CTNAG	8 cut(s)	581, 687, 738, 1277, 1652, 1776, 1815, 2055
BstDSI	CCRYGG	2 cut(s)	186, 269
BstENI	CCTNNNNNAGG	1 cut(s)	1200
BstF5I	GGATG	9 cut(s)	186, 447, 952, 1344, 1361, 1685, 2031, 2045, 2223
BstFNI	CGCG	1 cut(s)	281
BstH2I	RGCGCY	3 cut(s)	60, 197, 869
BstHHI	GCGC	5 cut(s)	13, 59, 196, 205, 868
BstMAI	GTCTC	2 cut(s)	308, 984
BstNI	CCWGG	2 cut(s)	342, 1758
BstSCI	CCNGG	4 cut(s)	302, 303, 340, 1756
BstSFI	CTRYAG	2 cut(s)	616, 729
BstSLI	GKGCMC	3 cut(s)	413, 1060, 1258
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	7 cut(s)	421, 715, 808, 1309, 1417, 2025, 2167
BstX2I	RGATCY	3 cut(s)	236, 609, 1262
BstYI	RGATCY	3 cut(s)	236, 609, 1262
BsuI	GTATCC	1 cut(s)	2023
BsuRI	GGCC	6 cut(s)	185, 302, 384, 469, 1752, 2151
BtgI	CCRYGG	2 cut(s)	186, 269
BtsCI	GGATG	9 cut(s)	186, 447, 952, 1344, 1361, 1685, 2031, 2045, 2223
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	4 cut(s)	166, 1125, 1232, 1926
Cac8I	GCNNGC	4 cut(s)	801, 1089, 1300, 2225
CaiI	CAGNNNCTG	1 cut(s)	1124
CfoI	GCGC	5 cut(s)	13, 59, 196, 205, 868
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	4 cut(s)	301, 382, 455, 1205
Cfr9I	CCCGGG	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	164, 1425, 1886
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviAII	CATG	4 cut(s)	145, 924, 983, 1502
CviQI	GTAC	3 cut(s)	164, 1425, 1886
DdeI	CTNAG	8 cut(s)	581, 687, 738, 1277, 1652, 1776, 1815, 2055
DinI	GGCGCC	2 cut(s)	58, 867
DrdI	GACNNNNNNGTC	1 cut(s)	1752
DriI	GACNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	1752
EaeI	YGGCCR	2 cut(s)	183, 1750
Eam1104I	CTCTTC	4 cut(s)	404, 555, 2089, 2187
Eam1105I	GACNNNNNGTC	1 cut(s)	321
EarI	CTCTTC	4 cut(s)	404, 555, 2089, 2187
Ecl136II	GAGCTC	2 cut(s)	121, 585
Eco130I	CCWWGG	5 cut(s)	319, 464, 505, 942, 2152
Eco24I	GRGCYC	3 cut(s)	123, 399, 587
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	455, 1205
Eco53kI	GAGCTC	2 cut(s)	121, 585
Eco57I	CTGAAG	1 cut(s)	1725
Eco72I	CACGTG	1 cut(s)	1055
Eco88I	CYCGRG	3 cut(s)	206, 303, 386
EcoICRI	GAGCTC	2 cut(s)	121, 585
EcoNI	CCTNNNNNAGG	1 cut(s)	1200
EcoO109I	RGGNCCY	3 cut(s)	382, 455, 1205
EcoRII	CCWGG	2 cut(s)	340, 1756
EcoT14I	CCWWGG	5 cut(s)	319, 464, 505, 942, 2152
EcoT38I	GRGCYC	3 cut(s)	123, 399, 587
EgeI	GGCGCC	2 cut(s)	58, 867
EheI	GGCGCC	2 cut(s)	58, 867
ErhI	CCWWGG	5 cut(s)	319, 464, 505, 942, 2152
FaeI	CATG	4 cut(s)	148, 927, 986, 1505
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	7 cut(s)	104, 251, 446, 468, 1049, 1191, 1914
FatI	CATG	4 cut(s)	144, 923, 982, 1501
FauNDI	CATATG	2 cut(s)	844, 975
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	2 cut(s)	325, 705
FokI	GGATG	9 cut(s)	193, 454, 959, 1331, 1348, 1672, 2032, 2038, 2230
FriOI	GRGCYC	3 cut(s)	123, 399, 587
FspBI	CTAG	6 cut(s)	14, 48, 254, 465, 2198, 2242
GlaI	GCGC	5 cut(s)	12, 58, 195, 204, 867
GsaI	CCCAGC	2 cut(s)	261, 355
GsuI	CTGGAG	3 cut(s)	877, 1347, 1473
HaeII	RGCGCY	3 cut(s)	60, 197, 869
HaeIII	GGCC	6 cut(s)	185, 302, 384, 469, 1752, 2151
HapII	CCGG	5 cut(s)	304, 639, 1188, 1239, 2034
HhaI	GCGC	5 cut(s)	13, 59, 196, 205, 868
Hin1I	GRCGYC	3 cut(s)	57, 93, 866
Hin1II	CATG	4 cut(s)	148, 927, 986, 1505
Hin6I	GCGC	5 cut(s)	11, 57, 194, 203, 866
HinP1I	GCGC	5 cut(s)	11, 57, 194, 203, 866
HincII	GTYRAC	2 cut(s)	326, 1881
HindII	GTYRAC	2 cut(s)	326, 1881
HindIII	AAGCTT	1 cut(s)	570
HpaI	GTTAAC	1 cut(s)	1881
HpaII	CCGG	5 cut(s)	304, 639, 1188, 1239, 2034
HphI	GGTGA	1 cut(s)	1517
Hpy166II	GTNNAC	6 cut(s)	164, 326, 706, 1058, 1256, 1881
Hpy188I	TCNGA	6 cut(s)	125, 582, 676, 751, 1293, 1779
Hpy188III	TCNNGA	9 cut(s)	311, 694, 720, 1100, 1188, 1452, 1692, 1743, 1973
Hpy8I	GTNNAC	6 cut(s)	164, 326, 706, 1058, 1256, 1881
Hpy99I	CGWCG	2 cut(s)	158, 1863
HpyAV	CCTTC	5 cut(s)	586, 926, 1829, 1833, 2088
HpyCH4III	ACNGT	9 cut(s)	427, 557, 808, 840, 1048, 1236, 1529, 1885, 1921
HpyCH4IV	ACGT	3 cut(s)	93, 708, 1054
HpyF3I	CTNAG	8 cut(s)	581, 687, 738, 1277, 1652, 1776, 1815, 2055
HpySE526I	ACGT	3 cut(s)	93, 708, 1054
Hsp92I	GRCGYC	3 cut(s)	57, 93, 866
Hsp92II	CATG	4 cut(s)	148, 927, 986, 1505
HspAI	GCGC	5 cut(s)	11, 57, 194, 203, 866
KasI	GGCGCC	2 cut(s)	56, 865
Kpn2I	TCCGGA	1 cut(s)	1187
Ksp22I	TGATCA	1 cut(s)	916
KspAI	GTTAAC	1 cut(s)	1881
LguI	GCTCTTC	2 cut(s)	404, 2187
LmnI	GCTCC	7 cut(s)	118, 126, 896, 955, 1190, 1768, 1871
Lsp1109I	GCAGC	7 cut(s)	421, 715, 808, 1309, 1417, 2025, 2167
LweI	GCATC	1 cut(s)	1370
MaeI	CTAG	6 cut(s)	14, 48, 254, 465, 2198, 2242
MaeII	ACGT	3 cut(s)	93, 708, 1054
MaeIII	GTNAC	5 cut(s)	94, 896, 1048, 1547, 1771
MbiI	CCGCTC	1 cut(s)	1067
MboII	GAAGA	8 cut(s)	391, 542, 604, 761, 1719, 1731, 2076, 2204
MfeI	CAATTG	2 cut(s)	366, 1667
MflI	RGATCY	3 cut(s)	236, 609, 1262
MhlI	GDGCHC	9 cut(s)	123, 399, 413, 587, 674, 1060, 1195, 1258, 1765
Mly113I	GGCGCC	2 cut(s)	57, 866
MlyI	GAGTC	1 cut(s)	1670
MmeI	TCCRAC	1 cut(s)	96
MroI	TCCGGA	1 cut(s)	1187
MroXI	GAANNNNTTC	1 cut(s)	1854
MseI	TTAA	7 cut(s)	416, 1074, 1377, 1382, 1403, 1587, 1880
MslI	CAYNNNNRTG	3 cut(s)	108, 143, 1293
MspA1I	CMGCKG	2 cut(s)	728, 1430
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	5 cut(s)	304, 639, 1188, 1239, 2034
MspR9I	CCNGG	4 cut(s)	304, 305, 342, 1758
MunI	CAATTG	2 cut(s)	366, 1667
Mva1269I	GAATGC	1 cut(s)	1334
MvaI	CCWGG	2 cut(s)	342, 1758
MvnI	CGCG	1 cut(s)	281
NarI	GGCGCC	2 cut(s)	57, 866
NciI	CCSGG	2 cut(s)	304, 305
NdeI	CATATG	2 cut(s)	844, 975
NlaIII	CATG	4 cut(s)	148, 927, 986, 1505
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	94, 1547
PaeR7I	CTCGAG	1 cut(s)	386
PciSI	GCTCTTC	2 cut(s)	404, 2187
PcsI	WCGNNNNNNNCGW	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	1334
PdmI	GAANNNNTTC	1 cut(s)	1854
PflMI	CCANNNNNTGG	2 cut(s)	74, 1691
PleI	GAGTC	1 cut(s)	1669
PluTI	GGCGCC	2 cut(s)	60, 869
PmaCI	CACGTG	1 cut(s)	1055
PmlI	CACGTG	1 cut(s)	1055
PpsI	GAGTC	1 cut(s)	1669
Ppu21I	YACGTR	1 cut(s)	1055
PpuMI	RGGWCCY	2 cut(s)	455, 1205
PshBI	ATTAAT	2 cut(s)	1377, 1403
Psp124BI	GAGCTC	2 cut(s)	123, 587
Psp5II	RGGWCCY	2 cut(s)	455, 1205
Psp6I	CCWGG	2 cut(s)	340, 1756
PspCI	CACGTG	1 cut(s)	1055
PspFI	CCCAGC	2 cut(s)	257, 351
PspGI	CCWGG	2 cut(s)	340, 1756
PspPI	GGNCC	4 cut(s)	301, 382, 455, 1205
PspPPI	RGGWCCY	2 cut(s)	455, 1205
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	2 cut(s)	620, 733
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	3 cut(s)	236, 609, 1262
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	3 cut(s)	165, 1426, 1887
RsaNI	GTAC	3 cut(s)	164, 1425, 1886
RseI	CAYNNNNRTG	3 cut(s)	108, 143, 1293
SacI	GAGCTC	2 cut(s)	123, 587
SalI	GTCGAC	1 cut(s)	324
SapI	GCTCTTC	2 cut(s)	404, 2187
SaqAI	TTAA	7 cut(s)	416, 1074, 1377, 1382, 1403, 1587, 1880
Sau96I	GGNCC	4 cut(s)	301, 382, 455, 1205
SchI	GAGTC	1 cut(s)	1670
ScrFI	CCNGG	4 cut(s)	304, 305, 342, 1758
SduI	GDGCHC	9 cut(s)	123, 399, 413, 587, 674, 1060, 1195, 1258, 1765
SfaNI	GCATC	1 cut(s)	1370
SfcI	CTRYAG	2 cut(s)	616, 729
SfoI	GGCGCC	2 cut(s)	58, 867
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	455, 1205
SlaI	CTCGAG	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	305
SmiMI	CAYNNNNRTG	3 cut(s)	108, 143, 1293
SmlI	CTYRAG	2 cut(s)	386, 415
SmoI	CTYRAG	2 cut(s)	386, 415
SspDI	GGCGCC	2 cut(s)	56, 865
SspMI	CTAG	6 cut(s)	14, 48, 254, 465, 2198, 2242
SstI	GAGCTC	2 cut(s)	123, 587
StyD4I	CCNGG	4 cut(s)	302, 303, 340, 1756
StyI	CCWWGG	5 cut(s)	319, 464, 505, 942, 2152
TaaI	ACNGT	9 cut(s)	427, 557, 808, 840, 1048, 1236, 1529, 1885, 1921
TaiI	ACGT	3 cut(s)	96, 711, 1057
TaqI	TCGA	6 cut(s)	310, 325, 387, 993, 1063, 1269
TatI	WGTACW	2 cut(s)	163, 1885
TauI	GCSGC	8 cut(s)	30, 33, 194, 299, 302, 852, 1070, 1958
Tru1I	TTAA	7 cut(s)	416, 1074, 1377, 1382, 1403, 1587, 1880
Tru9I	TTAA	7 cut(s)	416, 1074, 1377, 1382, 1403, 1587, 1880
TscAI	CASTG	4 cut(s)	166, 1125, 1239, 1926
TseFI	GTSAC	2 cut(s)	94, 1547
TseI	GCWGC	7 cut(s)	434, 728, 796, 1322, 1430, 2013, 2180
Tsp45I	GTSAC	2 cut(s)	94, 1547
TspDTI	ATGAA	4 cut(s)	761, 963, 1926, 2205
TspGWI	ACGGA	2 cut(s)	392, 1337
TspMI	CCCGGG	1 cut(s)	303
TspRI	CASTG	4 cut(s)	166, 1125, 1239, 1926
Van91I	CCANNNNNTGG	2 cut(s)	74, 1691
Vha464I	CTTAAG	1 cut(s)	415
VneI	GTGCAC	2 cut(s)	1056, 1254
VpaK11BI	GGWCC	2 cut(s)	455, 1205
VspI	ATTAAT	2 cut(s)	1377, 1403
XagI	CCTNNNNNAGG	1 cut(s)	1200
XapI	RAATTY	4 cut(s)	1559, 1797, 1850, 2004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1351
XhoI	CTCGAG	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	303
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	2 cut(s)	325, 705
XmnI	GAANNNNTTC	1 cut(s)	1854
XspI	CTAG	6 cut(s)	14, 48, 254, 465, 2198, 2242
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.