Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

67612206 .. 67623545

Gene Structure 11340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG479200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATAATGTCTACGTCTATCACTCTGGATCGGCTACAGATTCTCAGGTTGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACGATTCAGCTATGGCAGCCTGCTACTGTCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGCGGCACAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGCGAAGCCAGAGGCTCCTCTTTCCCCTGCAATGGATGCTGTAATAAGAGTATTCAAATGTGTCGCTGGATTATCTAAGAGTGCAGGCAAGGCAGAGTTGTTTGGTGCTGCTGGAGTTGTATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCATTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTAGTGCTCCTATTGTTACTCAGAAGGAAGAAAACCCAGAATCTGGAAATGGGTTTAATAAAGAGGCAGAGGGTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

266

Amino Acids

28.25

Weight (kDa)

6.6

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	49 - 88	7.9e-06	Proteasome subunit
KH_1	PF00013	130 - 167	7.4e-06	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	2 cut(s)	653, 761
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	156, 471
AclWI	GGATC	3 cut(s)	37, 448, 515
AcoI	YGGCCR	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	4 cut(s)	289, 397, 653, 761
AgsI	TTSAA	2 cut(s)	313, 693
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	3 cut(s)	97, 593, 797
AluI	AGCT	3 cut(s)	97, 593, 797
Alw21I	GWGCWC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	37, 448, 515
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	3 cut(s)	103, 365, 473
AseI	ATTAAT	2 cut(s)	420, 446
AspLEI	GCGC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	172
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	115, 352, 460
BccI	CCATC	2 cut(s)	395, 655
BceAI	ACGGC	2 cut(s)	603, 699
BciT130I	CCWGG	1 cut(s)	526
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	4 cut(s)	104, 157, 366, 474
BlsI	GCNGC	4 cut(s)	105, 158, 367, 475
Bme1390I	CCNGG	1 cut(s)	526
BmiI	GGNNCC	3 cut(s)	174, 199, 273
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	283, 413
BpmI	CTGGAG	4 cut(s)	184, 390, 516, 585
BpuEI	CTTGAG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	249, 524, 525
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 397, 653, 761
Bse1I	ACTGG	2 cut(s)	201, 568
Bse3DI	GCAATG	2 cut(s)	294, 539
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	3 cut(s)	249, 524, 525
BseGI	GGATG	4 cut(s)	298, 387, 404, 647
BseLI	CCNNNNNNNGG	4 cut(s)	289, 397, 653, 761
BseMI	GCAATG	2 cut(s)	294, 539
BseMII	CTCAG	3 cut(s)	59, 628, 752
BseNI	ACTGG	2 cut(s)	201, 568
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	115, 352, 460
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	714
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	727
BslI	CCNNNNNNNGG	4 cut(s)	289, 397, 653, 761
BsnI	GGCC	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	4 cut(s)	29, 223, 440, 520
BspACI	CCGC	2 cut(s)	156, 471
BspANI	GGCC	1 cut(s)	714
BspCNI	CTCAG	3 cut(s)	58, 627, 751
BspLI	GGNNCC	3 cut(s)	174, 199, 273
BspPI	GGATC	3 cut(s)	37, 448, 515
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	294, 539
BsrI	ACTGG	2 cut(s)	201, 568
BssECI	CCNNGG	3 cut(s)	249, 524, 525
BssMI	GATC	4 cut(s)	29, 223, 440, 520
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	115, 147, 163
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	108, 343
BstDEI	CTNAG	4 cut(s)	45, 333, 614, 738
BstF5I	GGATG	4 cut(s)	298, 387, 404, 647
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	32, 226, 443, 523
BstMBI	GATC	4 cut(s)	29, 223, 440, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 179, 293, 347
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	115, 352, 460
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	298, 387, 404, 647
Cac8I	GCNNGC	2 cut(s)	108, 343
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	1 cut(s)	231
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	4 cut(s)	45, 333, 614, 738
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	4 cut(s)	31, 225, 442, 522
DpnII	GATC	4 cut(s)	29, 223, 440, 520
DrdI	GACNNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	234
FatI	CATG	1 cut(s)	230
FauNDI	CATATG	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	104, 157, 366, 474
FokI	GGATG	4 cut(s)	305, 374, 391, 634
Fsp4HI	GCNGC	4 cut(s)	104, 157, 366, 474
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	104, 157, 366, 474
GsuI	CTGGAG	4 cut(s)	184, 390, 516, 585
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	714
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	7 cut(s)	41, 91, 216, 602, 623, 635, 758
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	58, 741
Hpy188III	TCNNGA	6 cut(s)	27, 495, 506, 654, 705, 762
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	233, 736
HpyCH4III	ACNGT	3 cut(s)	115, 147, 163
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	287, 341, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 179, 293, 347
HpyF3I	CTNAG	4 cut(s)	45, 333, 614, 738
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	234
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	29, 223, 440, 520
LmnI	GCTCC	4 cut(s)	203, 277, 730, 794
Lsp1109I	GCAGC	3 cut(s)	115, 352, 460
LweI	GCATC	2 cut(s)	283, 413
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	203, 733
MalI	GATC	4 cut(s)	31, 225, 442, 522
MboI	GATC	4 cut(s)	29, 223, 440, 520
MboII	GAAGA	4 cut(s)	68, 681, 693, 758
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	4 cut(s)	421, 426, 577, 629
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	4 cut(s)	420, 425, 446, 774
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	526
MunI	CAATTG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	4 cut(s)	103, 179, 293, 347
NarI	GGCGCC	1 cut(s)	173
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	4 cut(s)	29, 223, 440, 520
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	3 cut(s)	174, 199, 273
PasI	CCCWGGG	1 cut(s)	525
PfeI	GAWTC	6 cut(s)	41, 91, 216, 602, 635, 758
PflMI	CCANNNNNTGG	2 cut(s)	653, 761
PkrI	GCNGC	4 cut(s)	105, 158, 367, 475
PleI	GAGTC	1 cut(s)	631
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	631
PshBI	ATTAAT	2 cut(s)	420, 446
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	174, 199, 273
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SaqAI	TTAA	4 cut(s)	420, 425, 446, 774
SatI	GCNGC	4 cut(s)	104, 157, 366, 474
Sau3AI	GATC	4 cut(s)	29, 223, 440, 520
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	727
SetI	ASST	7 cut(s)	18, 51, 99, 193, 571, 595, 799
SfaNI	GCATC	2 cut(s)	283, 413
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	4 cut(s)	421, 426, 577, 629
SsiI	CCGC	2 cut(s)	156, 471
SspDI	GGCGCC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	115, 147, 163
TaiI	ACGT	1 cut(s)	18
TasI	AATT	4 cut(s)	421, 426, 577, 629
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	6 cut(s)	41, 91, 216, 602, 635, 758
Tru1I	TTAA	4 cut(s)	420, 425, 446, 774
Tru9I	TTAA	4 cut(s)	420, 425, 446, 774
TseI	GCWGC	3 cut(s)	103, 365, 473
TspDTI	ATGAA	2 cut(s)	68, 536
TspGWI	ACGGA	1 cut(s)	380
Van91I	CCANNNNNTGG	2 cut(s)	653, 761
VspI	ATTAAT	2 cut(s)	420, 446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.