Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

22568252 .. 22570028

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG228200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGCGAGGCAGAGTTGTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACGCAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGAAGAGGTTCCATTCTATGCTGCCGCTGATGAGAGGATTATTGAAATGCAGGGAGAAACCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTAGTGTCTCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTTTTTGAGAAAACTATAAGCTTAAATTCTGCTGATGTTTTCTGTGATTTAATTTCTTCGCATTGTTGTTTATTGACTATGGGTGCATCTTCAGTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

161

Amino Acids

17.09

Weight (kDa)

6.41

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	34 - 100	3.8e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 234
AclWI	GGATC	2 cut(s)	160, 468
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	181, 441
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	25, 254
AjnI	CCWGG	1 cut(s)	477
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	287, 366
AluI	AGCT	2 cut(s)	287, 366
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	160, 468
ApeKI	GCWGC	3 cut(s)	77, 185, 230
ApoI	RAATTY	1 cut(s)	370
AseI	ATTAAT	2 cut(s)	132, 158
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	64, 172, 217
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	4 cut(s)	78, 186, 231, 234
BlsI	GCNGC	4 cut(s)	79, 187, 232, 235
Bme1390I	CCNGG	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	2 cut(s)	125, 440
BpmI	CTGGAG	3 cut(s)	102, 228, 433
BpuEI	CTTGAG	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	477, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	477, 478
BseGI	GGATG	3 cut(s)	10, 99, 116
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	36, 302
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	64, 172, 217
BsgI	GTGCAG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	152, 328, 473
BspACI	CCGC	2 cut(s)	183, 234
BspCNI	CTCAG	2 cut(s)	37, 303
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	160, 468
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	477, 478
BssMI	GATC	3 cut(s)	152, 328, 473
Bst2UI	CCWGG	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	55, 126
BstDEI	CTNAG	2 cut(s)	45, 311
BstF5I	GGATG	3 cut(s)	10, 99, 116
BstKTI	GATC	3 cut(s)	155, 331, 476
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	152, 328, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	64, 172, 217
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	10, 99, 116
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	55, 126
Csp6I	GTAC	2 cut(s)	180, 440
CviJI	RGCY	3 cut(s)	287, 366, 483
CviKI_1	RGCY	3 cut(s)	287, 366, 483
CviQI	GTAC	2 cut(s)	180, 440
DdeI	CTNAG	2 cut(s)	45, 311
DpnI	GATC	3 cut(s)	154, 330, 475
DpnII	GATC	3 cut(s)	152, 328, 473
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	477
FaiI	YATR	5 cut(s)	170, 228, 333, 362, 425
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	78, 186, 231, 234
FokI	GGATG	3 cut(s)	17, 86, 103
Fsp4HI	GCNGC	4 cut(s)	78, 186, 231, 234
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	4 cut(s)	78, 186, 231, 234
GsuI	CTGGAG	3 cut(s)	102, 228, 433
HindIII	AAGCTT	1 cut(s)	364
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	207, 290, 459
Hpy8I	GTNNAC	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	53, 89, 259, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
HpyF3I	CTNAG	2 cut(s)	45, 311
HpySE526I	ACGT	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	152, 328, 473
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	3 cut(s)	64, 172, 217
LweI	GCATC	2 cut(s)	125, 440
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	28
MalI	GATC	3 cut(s)	154, 330, 475
MboI	GATC	3 cut(s)	152, 328, 473
MboII	GAAGA	4 cut(s)	224, 332, 393, 426
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	4 cut(s)	133, 138, 370, 396
MnlI	CCTC	5 cut(s)	52, 208, 237, 306, 354
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	6 cut(s)	132, 137, 158, 272, 368, 395
MspA1I	CMGCKG	2 cut(s)	185, 236
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	59, 86, 293
NdeII	GATC	3 cut(s)	152, 328, 473
NlaIV	GGNNCC	1 cut(s)	219
PasI	CCCWGGG	1 cut(s)	478
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	79, 187, 232, 235
PshBI	ATTAAT	2 cut(s)	132, 158
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	2 cut(s)	181, 441
RsaNI	GTAC	2 cut(s)	180, 440
SaqAI	TTAA	6 cut(s)	132, 137, 158, 272, 368, 395
SatI	GCNGC	4 cut(s)	78, 186, 231, 234
Sau3AI	GATC	3 cut(s)	152, 328, 473
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	7 cut(s)	31, 219, 272, 279, 289, 312, 368
SfaNI	GCATC	2 cut(s)	125, 440
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	4 cut(s)	133, 138, 370, 396
SsiI	CCGC	2 cut(s)	183, 234
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	477
TaiI	ACGT	1 cut(s)	31
TasI	AATT	4 cut(s)	133, 138, 370, 396
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	6 cut(s)	132, 137, 158, 272, 368, 395
Tru9I	TTAA	6 cut(s)	132, 137, 158, 272, 368, 395
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	3 cut(s)	77, 185, 230
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	449
VspI	ATTAAT	2 cut(s)	132, 158
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.