Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Reverse (-)

66291107 .. 66293083

Gene Structure 1977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATGCTGTAATAAGAGTATTCAAATGTGTCGCTGGATTATCTAAGAGTGCAGGCACGGCAGAGTTGTTTGGTGCTGCTGGAGTTGTATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGGGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTGTGCGAGTATTGTCTGGAGGTATGCTTTTAGTGTGGCACAGTGTTCCATTCTATGTTGCCGCTGATGAGAGGATTATTGAAATGCAGGGAGAAACCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTAGTGTCTCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTTTTTGAGAAAATTTACACTGCTCCAGTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAAACTGGAGGTGGCACTAATTATCCTCTCACAGCTACACGGGAATCTTTGTTTCTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACATTCTTCAGGACTTGGCCGTCCTAGTGCTCCTATTGTTACTCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTTGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAAGCGGCTCAACAACTGATTCAGGTATGCTTGCCAATGGAACAGAAAAAGCCCATCTATACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

290

Amino Acids

31.22

Weight (kDa)

6.01

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	34 - 106	3.8e-07	KH domain
KH_1	PF00013	213 - 276	2.2e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	788
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	3 cut(s)	183, 252, 809
AclWI	GGATC	2 cut(s)	160, 407
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	375, 651, 704
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	2 cut(s)	181, 741
AfiI	CCNNNNNNNGG	3 cut(s)	109, 126, 545
AgsI	TTSAA	6 cut(s)	25, 272, 585, 689, 704, 806
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	2 cut(s)	305, 485
AluI	AGCT	2 cut(s)	305, 485
Alw21I	GWGCWC	2 cut(s)	300, 619
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	160, 407
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	77, 185
ApoI	RAATTY	3 cut(s)	375, 651, 704
AseI	ATTAAT	2 cut(s)	132, 158
AsuHPI	GGTGA	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	788
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
Bbv12I	GWGCWC	2 cut(s)	300, 619
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	64, 172
BccI	CCATC	3 cut(s)	107, 547, 866
BceAI	ACGGC	3 cut(s)	75, 495, 591
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	308, 612
BisI	GCNGC	4 cut(s)	78, 186, 252, 810
BlsI	GCNGC	4 cut(s)	79, 187, 253, 811
Bme1390I	CCNGG	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	727, 790
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	125
BpmI	CTGGAG	4 cut(s)	102, 228, 372, 477
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	416, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 126, 545
Bse1I	ACTGG	2 cut(s)	389, 460
Bse21I	CCTNAGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	416, 417
BseGI	GGATG	4 cut(s)	10, 99, 116, 539
BseLI	CCNNNNNNNGG	3 cut(s)	109, 126, 545
BseMII	CTCAG	4 cut(s)	320, 520, 644, 660
BseNI	ACTGG	2 cut(s)	389, 460
BseXI	GCAGC	2 cut(s)	64, 172
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	606
BshNI	GGYRCC	1 cut(s)	788
BsiHKAI	GWGCWC	2 cut(s)	300, 619
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	109, 126, 545
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	300, 619
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	3 cut(s)	152, 346, 412
BspACI	CCGC	3 cut(s)	183, 252, 809
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	4 cut(s)	321, 519, 643, 661
BspLI	GGNNCC	2 cut(s)	727, 790
BspPI	GGATC	2 cut(s)	160, 407
BspT107I	GGYRCC	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	739
BsrI	ACTGG	2 cut(s)	389, 460
BssECI	CCNNGG	2 cut(s)	416, 417
BssMI	GATC	3 cut(s)	152, 346, 412
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	3 cut(s)	233, 739, 775
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	2 cut(s)	55, 836
BstDEI	CTNAG	5 cut(s)	45, 329, 506, 630, 669
BstF5I	GGATG	4 cut(s)	10, 99, 116, 539
BstKTI	GATC	3 cut(s)	155, 349, 415
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	152, 346, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 311, 646
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	64, 172
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	4 cut(s)	10, 99, 116, 539
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	238, 381, 780
Cac8I	GCNNGC	2 cut(s)	55, 836
Csp6I	GTAC	2 cut(s)	180, 740
CviJI	RGCY	9 cut(s)	305, 422, 485, 510, 572, 606, 728, 812, 856
CviKI_1	RGCY	9 cut(s)	305, 422, 485, 510, 572, 606, 728, 812, 856
CviQI	GTAC	2 cut(s)	180, 740
DdeI	CTNAG	5 cut(s)	45, 329, 506, 630, 669
DpnI	GATC	3 cut(s)	154, 348, 414
DpnII	GATC	3 cut(s)	152, 346, 412
DrdI	GACNNNNNNGTC	1 cut(s)	606
DseDI	GACNNNNNNGTC	1 cut(s)	606
EaeI	YGGCCR	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	416
FaiI	YATR	9 cut(s)	170, 215, 246, 351, 441, 561, 666, 832, 864
FaqI	GGGAC	1 cut(s)	768
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	78, 186, 252, 810
FokI	GGATG	4 cut(s)	17, 86, 103, 526
Fsp4HI	GCNGC	4 cut(s)	78, 186, 252, 810
FspBI	CTAG	2 cut(s)	308, 612
GluI	GCNGC	4 cut(s)	78, 186, 252, 810
GsuI	CTGGAG	4 cut(s)	102, 228, 372, 477
HaeIII	GGCC	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HinfI	GANTC	4 cut(s)	494, 515, 527, 823
HpaI	GTTAAC	1 cut(s)	735
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	5 cut(s)	207, 308, 398, 546, 597
Hpy8I	GTNNAC	1 cut(s)	735
HpyAV	CCTTC	2 cut(s)	683, 687
HpyCH4III	ACNGT	3 cut(s)	233, 739, 775
HpyCH4V	TGCA	4 cut(s)	53, 277, 446, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 311, 646
HpyF3I	CTNAG	5 cut(s)	45, 329, 506, 630, 669
Ksp22I	TGATCA	1 cut(s)	346
KspAI	GTTAAC	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	152, 346, 412
LmnI	GCTCC	3 cut(s)	391, 622, 725
Lsp1109I	GCAGC	2 cut(s)	64, 172
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	308, 612
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	3 cut(s)	154, 348, 414
MboI	GATC	3 cut(s)	152, 346, 412
MboII	GAAGA	3 cut(s)	350, 573, 585
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	300, 619
MluCI	AATT	8 cut(s)	133, 138, 375, 469, 521, 651, 704, 768
MlyI	GAGTC	1 cut(s)	524
MseI	TTAA	5 cut(s)	132, 137, 158, 290, 734
MspA1I	CMGCKG	2 cut(s)	185, 254
MspR9I	CCNGG	1 cut(s)	418
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	3 cut(s)	59, 311, 646
NdeII	GATC	3 cut(s)	152, 346, 412
NlaIV	GGNNCC	2 cut(s)	727, 790
PasI	CCCWGGG	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	494, 527, 823
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	79, 187, 253, 811
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PshBI	ATTAAT	2 cut(s)	132, 158
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	727, 790
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	181, 741
RsaNI	GTAC	2 cut(s)	180, 740
SaqAI	TTAA	5 cut(s)	132, 137, 158, 290, 734
SatI	GCNGC	4 cut(s)	78, 186, 252, 810
Sau3AI	GATC	3 cut(s)	152, 346, 412
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	300, 619
SfaNI	GCATC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	8 cut(s)	133, 138, 375, 469, 521, 651, 704, 768
SsiI	CCGC	3 cut(s)	183, 252, 809
SspMI	CTAG	2 cut(s)	308, 612
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	233, 739, 775
TasI	AATT	8 cut(s)	133, 138, 375, 469, 521, 651, 704, 768
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	2 cut(s)	254, 812
TfiI	GAWTC	3 cut(s)	494, 527, 823
Tru1I	TTAA	5 cut(s)	132, 137, 158, 290, 734
Tru9I	TTAA	5 cut(s)	132, 137, 158, 290, 734
TscAI	CASTG	3 cut(s)	238, 388, 780
TseI	GCWGC	2 cut(s)	77, 185
TspDTI	ATGAA	2 cut(s)	428, 780
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	238, 388, 780
Van91I	CCANNNNNTGG	1 cut(s)	545
VspI	ATTAAT	2 cut(s)	132, 158
XapI	RAATTY	3 cut(s)	375, 651, 704
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	308, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.