Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002603

Physical Location & Seq

Genomic Coordinates Forward (+)

25922046 .. 25922810

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTAAAGGAAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCAGATTGAGTATTTTCTGTGCAGATTTAGAATGTTCGAGTATTAATATTGAGACTATCTTTGCAAGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

5.07

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	1 - 62	7.3e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26000
fragaria_vesca	FvH4_4g07200
malus_domestica	MD13G1239500.v1.1 MD16G1248300.v1.1
prunus_persica	Prupe.1G074800_v2.0.a1
pyrus_communis	pycom16g20810
rosa_chinensis	RchiOBHm_Chr1g0313971 RchiOBHm_Chr2g0148541 RchiOBHm_Chr4g0399461 RchiOBHm_Chr5g0014711 RchiOBHm_Chr6g0261341
rosa_laevigata	RLG00000009266 RLG00000030564 RLG00000030569
rosa_multiflora	Rmu_sc0002255.1_g000002 Rmu_sc0002285.1_g000008 Rmu_sc0039997.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344350
rosa_rugosa	Rorug04G0017100
rosa_samantha	Rh1AG125900 Rh1BG084500 Rh1CG119800 Rh2BG479200 Rh2CG224100 Rh2CG303100 Rh2DG228200 Rh2DG339000 Rh2DG488100 Rh4AG094900 Rh4BG092200 Rh4CG103100 Rh4DG087100 Rh4DG115200 Rh5BG489900 Rh5CG124300 Rh5CG332000 Rh5CG513700 Rh6CG106600
rosa_wichuraiana	Rw1G021120 Rw4G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	6, 59, 213
AfaI	GTAC	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	3 cut(s)	6, 59, 213
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	165, 223
BlsI	GCNGC	2 cut(s)	166, 224
BmiI	GGNNCC	2 cut(s)	82, 145
Bpu10I	CCTNAGC	1 cut(s)	24
BseGI	GGATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	82, 145
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	94
BssMI	GATC	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	94, 130
BstAUI	TGTACA	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	95
CviJI	RGCY	3 cut(s)	83, 167, 225
CviKI_1	RGCY	3 cut(s)	83, 167, 225
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
FaiI	YATR	3 cut(s)	21, 191, 228
FaqI	GGGAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	165, 223
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	165, 223
GluI	GCNGC	2 cut(s)	165, 223
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	94, 130
HpyCH4V	TGCA	3 cut(s)	4, 263, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	91, 129, 140, 146, 167, 211, 217, 256
Lsp1109I	GCAGC	1 cut(s)	234
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MluCI	AATT	4 cut(s)	6, 59, 123, 213
MnlI	CCTC	3 cut(s)	19, 21, 157
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	3 cut(s)	42, 89, 285
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	82, 145
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	166, 224
PshBI	ATTAAT	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	82, 145
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	42, 89, 285
SatI	GCNGC	2 cut(s)	165, 223
Sau3AI	GATC	1 cut(s)	208
SetI	ASST	4 cut(s)	118, 149, 159, 227
Sse9I	AATT	4 cut(s)	6, 59, 123, 213
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	94, 130
TaqI	TCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	6, 59, 123, 213
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	42, 89, 285
Tru9I	TTAA	3 cut(s)	42, 89, 285
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	3 cut(s)	6, 59, 213
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.