Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

13354992 .. 13357629

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTACATCCTCTGGTGATGCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAATCCTCCCGCCGCTTCTTGCGCCACCGGGAATGGCTCCAACAACGCCGACGCGATGTTACTGCAAAACCCTAGGGTTTATGGCTGCGTCATCGGTCTCCAGAGAGGTCGTACGGTTGAGATCTTCAACAGTTTCGAGCTGATATTCGATCCTGCTCTTGATACTCTCGACAGATCCTTCCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGGTATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTCTGATGGACATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCCTGTGACTATCTACGAAAGCGAATTTCATGTCATTGATGGAATTCCTCAGTCGATTTTCGTGCATACCAGCTACACAATTGAGACAGTTGAAGCTGAAAGAATATCTGTTGATCATGTTGCACATCTTAAGCCATCTGATGGAGGCTCAGCTGCGACTCAGTTGGCTGCTCATCTTACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTATACCAGCATATTGTCGCTATGCAGAAAGGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCTAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAGTTCAATGAAAATTTCTTGATGGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGGTAGGACTGCGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

317

Amino Acids

35.4

Weight (kDa)

6.22

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 135	3e-23	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	184 - 298	7e-30	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	149
AciI	CCGC	4 cut(s)	21, 105, 108, 780
AclWI	GGATC	3 cut(s)	239, 264, 462
AcsI	RAATTY	4 cut(s)	482, 501, 805, 896
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	208, 821, 868
AfiI	CCNNNNNNNGG	1 cut(s)	599
AflII	CTTAAG	1 cut(s)	587
AgsI	TTSAA	5 cut(s)	34, 223, 551, 799, 901
AluBI	AGCT	7 cut(s)	37, 94, 235, 386, 531, 554, 611
AluI	AGCT	7 cut(s)	37, 94, 235, 386, 531, 554, 611
Alw26I	GTCTC	4 cut(s)	29, 197, 536, 739
AlwI	GGATC	3 cut(s)	239, 264, 462
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	180, 611, 626
ApoI	RAATTY	4 cut(s)	482, 501, 805, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	7, 119
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	61, 728
AvaI	CYCGRG	1 cut(s)	278
AvrII	CCTAGG	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
BbvI	GCAGC	3 cut(s)	167, 598, 613
BccI	CCATC	7 cut(s)	327, 385, 491, 593, 601, 662, 808
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 502, 536
BclI	TGATCA	2 cut(s)	571, 855
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	29, 197, 536, 739
BfaI	CTAG	4 cut(s)	78, 168, 756, 848
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	5 cut(s)	108, 181, 612, 627, 780
BlnI	CCTAGG	1 cut(s)	167
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	109, 182, 613, 628, 781
Bme1390I	CCNGG	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	6, 133
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	42, 651
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	29, 197
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	858
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	40, 338
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	7 cut(s)	104, 521, 621, 632, 734, 750, 778
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	167, 598, 613
Bsh1236I	CGCG	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	4 cut(s)	29, 197, 536, 739
Bso31I	GGTCTC	2 cut(s)	29, 197
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
Bsp1720I	GCTNAGC	1 cut(s)	607
BspACI	CCGC	4 cut(s)	21, 105, 108, 780
BspCNI	CTCAG	7 cut(s)	103, 520, 620, 631, 735, 749, 777
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	6, 133
BspPI	GGATC	3 cut(s)	239, 264, 462
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	587
BspTNI	GGTCTC	2 cut(s)	29, 197
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	858
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	211, 227, 547
Bst6I	CTCTTC	1 cut(s)	922
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	7 cut(s)	90, 507, 607, 618, 736, 743, 764
BstF5I	GGATG	2 cut(s)	40, 338
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 119
BstKTI	GATC	7 cut(s)	70, 219, 247, 272, 457, 574, 858
BstMAI	GTCTC	4 cut(s)	29, 197, 536, 739
BstMBI	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 691
BstSCI	CCNGG	1 cut(s)	122
BstSNI	TACGTA	1 cut(s)	325
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	167, 598, 613
BstX2I	RGATCY	3 cut(s)	216, 269, 454
BstYI	RGATCY	3 cut(s)	216, 269, 454
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	40, 338
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	1 cut(s)	777
CfoI	GCGC	2 cut(s)	7, 119
CseI	GACGC	3 cut(s)	155, 172, 362
Csp6I	GTAC	3 cut(s)	207, 820, 867
CviAII	CATG	5 cut(s)	443, 488, 575, 877, 949
CviQI	GTAC	3 cut(s)	207, 820, 867
DdeI	CTNAG	7 cut(s)	90, 507, 607, 618, 736, 743, 764
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	7 cut(s)	69, 218, 246, 271, 456, 573, 857
DpnII	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	922
Eco105I	TACGTA	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	167
Eco31I	GGTCTC	2 cut(s)	29, 197
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	375
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	5 cut(s)	446, 491, 578, 880, 952
FatI	CATG	5 cut(s)	442, 487, 574, 876, 948
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	2 cut(s)	571, 855
Fnu4HI	GCNGC	5 cut(s)	108, 181, 612, 627, 780
FokI	GGATG	2 cut(s)	27, 345
Fsp4HI	GCNGC	5 cut(s)	108, 181, 612, 627, 780
FspBI	CTAG	4 cut(s)	78, 168, 756, 848
GlaI	GCGC	2 cut(s)	6, 118
GluI	GCNGC	5 cut(s)	108, 181, 612, 627, 780
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	3 cut(s)	155, 172, 362
HhaI	GCGC	2 cut(s)	7, 119
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	446, 491, 578, 880, 952
Hin6I	GCGC	2 cut(s)	5, 117
HinP1I	GCGC	2 cut(s)	5, 117
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	5 cut(s)	362, 404, 616, 675, 785
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	61, 728
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	8 cut(s)	67, 367, 390, 598, 680, 744, 767, 790
Hpy188III	TCNNGA	7 cut(s)	196, 254, 263, 280, 658, 811, 859
Hpy8I	GTNNAC	1 cut(s)	892
Hpy99I	CGWCG	2 cut(s)	19, 149
HpyAV	CCTTC	4 cut(s)	18, 283, 298, 445
HpyCH4III	ACNGT	3 cut(s)	211, 227, 547
HpyCH4IV	ACGT	2 cut(s)	29, 324
HpyCH4V	TGCA	7 cut(s)	160, 373, 446, 523, 581, 709, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 691
HpyF3I	CTNAG	7 cut(s)	90, 507, 607, 618, 736, 743, 764
HpySE526I	ACGT	2 cut(s)	29, 324
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	446, 491, 578, 880, 952
HspAI	GCGC	2 cut(s)	5, 117
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	571, 855
Kzo9I	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	3 cut(s)	167, 598, 613
LweI	GCATC	2 cut(s)	42, 651
MaeI	CTAG	4 cut(s)	78, 168, 756, 848
MaeII	ACGT	2 cut(s)	29, 324
MaeIII	GTNAC	3 cut(s)	153, 350, 463
MalI	GATC	7 cut(s)	69, 218, 246, 271, 456, 573, 857
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
MboII	GAAGA	5 cut(s)	3, 211, 295, 449, 939
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	3 cut(s)	216, 269, 454
MluCI	AATT	7 cut(s)	482, 501, 537, 805, 830, 862, 896
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	54, 111, 194, 287, 516, 596, 877, 923
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	7 cut(s)	57, 84, 96, 399, 425, 588, 666
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	116, 691
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
NlaIII	CATG	5 cut(s)	446, 491, 578, 880, 952
NlaIV	GGNNCC	2 cut(s)	6, 133
NmuCI	GTSAC	2 cut(s)	350, 463
NsiI	ATGCAT	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	4 cut(s)	362, 404, 675, 785
Pfl23II	CGTACG	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	5 cut(s)	109, 182, 613, 628, 781
PleI	GAGTC	1 cut(s)	610
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	399
PspLI	CGTACG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	6, 133
PsuI	RGATCY	3 cut(s)	216, 269, 454
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	3 cut(s)	208, 821, 868
RsaNI	GTAC	3 cut(s)	207, 820, 867
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	7 cut(s)	57, 84, 96, 399, 425, 588, 666
SatI	GCNGC	5 cut(s)	108, 181, 612, 627, 780
Sau3AI	GATC	7 cut(s)	67, 216, 244, 269, 454, 571, 855
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	42, 651
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	278, 587
SmoI	CTYRAG	2 cut(s)	278, 587
SnaBI	TACGTA	1 cut(s)	325
Sse9I	AATT	7 cut(s)	482, 501, 537, 805, 830, 862, 896
SsiI	CCGC	4 cut(s)	21, 105, 108, 780
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	4 cut(s)	78, 168, 756, 848
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	211, 227, 547
TaiI	ACGT	2 cut(s)	32, 327
TaqI	TCGA	6 cut(s)	17, 231, 243, 264, 279, 512
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	7 cut(s)	482, 501, 537, 805, 830, 862, 896
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	2 cut(s)	110, 782
TfiI	GAWTC	4 cut(s)	362, 404, 675, 785
Tru1I	TTAA	7 cut(s)	57, 84, 96, 399, 425, 588, 666
Tru9I	TTAA	7 cut(s)	57, 84, 96, 399, 425, 588, 666
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	2 cut(s)	350, 463
TseI	GCWGC	3 cut(s)	180, 611, 626
Tsp45I	GTSAC	2 cut(s)	350, 463
TspDTI	ATGAA	5 cut(s)	417, 476, 816, 893, 937
TspRI	CASTG	1 cut(s)	910
Van91I	CCANNNNNTGG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	4 cut(s)	482, 501, 805, 896
XhoI	CTCGAG	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	4 cut(s)	78, 168, 756, 848
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.