Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

43216633 .. 43216878

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTGAGTCGTCGAGCAGTGGTCTCACGTTCAAGCTCCACCCTCTAGTCATGGTCAACATCTCCGACCACTACTCTAGGGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAATGCCACCGCAACAACCAACAAACACGGCTCCGAAGCCGTCGAAGACGAGTATCTTGTTCTCGCACGACATAGGGACGTCGGTGCTATCGGCGTTCGCCACACCGGAATCGTCCGATCAGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

8.24

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AciI	CCGC	2 cut(s)	111, 126
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	29, 93
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	140, 160
BcoDI	GTCTC	2 cut(s)	29, 93
BfaI	CTAG	2 cut(s)	47, 78
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	29, 93
BsmFI	GGGAC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	111, 126
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	29
BssMI	GATC	1 cut(s)	233
BssNI	GRCGYC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	6, 90
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	2 cut(s)	29, 93
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	5, 37, 147, 155
CviKI_1	RGCY	4 cut(s)	5, 37, 147, 155
DdeI	CTNAG	2 cut(s)	6, 90
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	55
FaiI	YATR	2 cut(s)	53, 189
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	47, 78
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	8, 225
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	5 cut(s)	67, 93, 151, 233, 238
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	3 cut(s)	16, 161, 200
HpyCH4IV	ACGT	2 cut(s)	29, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	6, 90
HpySE526I	ACGT	2 cut(s)	29, 195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	42, 152
LpnPI	CCDG	2 cut(s)	226, 235
MaeI	CTAG	2 cut(s)	47, 78
MaeII	ACGT	2 cut(s)	29, 195
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	2 cut(s)	54, 111
MspI	CCGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	17
SetI	ASST	4 cut(s)	32, 39, 198, 245
SsiI	CCGC	2 cut(s)	111, 126
SspMI	CTAG	2 cut(s)	47, 78
TaiI	ACGT	2 cut(s)	32, 198
TaqI	TCGA	2 cut(s)	14, 159
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	25
XspI	CTAG	2 cut(s)	47, 78
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.