Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

84424914 .. 84426355

Gene Structure 1442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG497200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCAGAAAGGAGAAATACCTTGTGAGAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCGAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCATAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

84

Amino Acids

9.54

Weight (kDa)

6.55

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	2 - 63	1.4e-15	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	28, 89
AfaI	GTAC	2 cut(s)	169, 241
AgsI	TTSAA	3 cut(s)	80, 95, 196
AluBI	AGCT	2 cut(s)	146, 181
AluI	AGCT	2 cut(s)	146, 181
Ama87I	CYCGRG	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	28, 89
AvaI	CYCGRG	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	163
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	38, 59
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	168, 240
CviJI	RGCY	3 cut(s)	146, 181, 219
CviKI_1	RGCY	3 cut(s)	146, 181, 219
CviQI	GTAC	2 cut(s)	168, 240
DdeI	CTNAG	2 cut(s)	38, 59
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	28
FaiI	YATR	3 cut(s)	139, 207, 216
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	62, 254
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	38, 59
HpySE526I	ACGT	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	84, 167, 196
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	238
MboII	GAAGA	3 cut(s)	47, 234, 241
MluCI	AATT	2 cut(s)	28, 89
MnlI	CCTC	3 cut(s)	218, 224, 227
PaeR7I	CTCGAG	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	36
PspXI	VCTCGAGB	1 cut(s)	163
RsaI	GTAC	2 cut(s)	169, 241
RsaNI	GTAC	2 cut(s)	168, 240
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	35
SetI	ASST	6 cut(s)	22, 68, 148, 183, 229, 241
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	28, 89
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	164, 186
TasI	AATT	2 cut(s)	28, 89
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	188
XapI	RAATTY	2 cut(s)	28, 89
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.