Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

4143892 .. 4147810

Gene Structure 3919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1047700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCAGAATCCTCCAGCAGCGGGCTGACGTTCAAGCTCCATCCACTGGTGATCGTCAACATCTCCGATCACTACTCTAGGGTTAAGTCCCAGATGCACCCGCCGATCACCAACACTCCAACACCACCACCCAACAACAGCGCTGAAGGAGCAGTAGAAGCAGCAGCAGCCTCCTCTTCTTCCTCCTCCTCCACCGCCTCCGCCTCGTCTCCGCGGGTCTTCGGCTGCGTTATCGGGGTTCAGAGAGGCCGCACGGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCCGAGACTCACTCCCTCGACCGCGCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTTCCACACTTTTACATACTGGGGTGGTACTCCACTGGAACAGATGCTCAGGAATCTGACATGAACATCCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTTCTCAACCCTTTGATCAATGCTGCTCAAAAGGATCTCCCAATCACTATTTACGAAAGTGAGATGCATGTCATTGATGGGATTCCACAGCTAATCTTCGTCAGTTCAAGCTATACTATTGAGACTGTGGAAGCTGAGCGCATTTCAGTTGACCATGTTGCCCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACTGGAATTCACAGTGCCATCAAGATGCTAAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTTGCTATGCAGAAAGGTGATATACCTTGTGAAAATTCACTGCTAAGACAAGTATCAAGTCTTCTGAGAAGGTTGCCTGCCATAGAATCGGGGAAATTTCAAGATGATTTCTTGATGGAATACAATGACACTTTGTTGATTACATATTTGGCTGTGCTGACCAACTGCTCAAGTACAACGAATGAGCTGGTCGACAAGTTCAACACCGCATATGATAGGCACAGTCGAAGAGGTGGACGGACTGCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

333

Amino Acids

36.75

Weight (kDa)

6.05

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 150	9.8e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	199 - 313	4.9e-31	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	46, 644
AccI	GTMKAC	1 cut(s)	936
AccII	CGCG	2 cut(s)	214, 315
AciI	CCGC	9 cut(s)	21, 101, 195, 201, 212, 214, 250, 313, 951
AclWI	GGATC	2 cut(s)	284, 507
AcsI	RAATTY	3 cut(s)	687, 778, 839
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	383, 919
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	21, 46, 644
AgsI	TTSAA	5 cut(s)	34, 268, 573, 845, 946
AluBI	AGCT	9 cut(s)	37, 273, 280, 340, 431, 556, 576, 599, 931
AluI	AGCT	9 cut(s)	37, 273, 280, 340, 431, 556, 576, 599, 931
Alw21I	GWGCWC	2 cut(s)	282, 342
Alw26I	GTCTC	3 cut(s)	213, 290, 581
AlwI	GGATC	2 cut(s)	284, 507
Ama87I	CYCGRG	2 cut(s)	293, 323
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	8 cut(s)	18, 161, 164, 167, 225, 488, 656, 671
ApoI	RAATTY	3 cut(s)	687, 778, 839
AspLEI	GCGC	3 cut(s)	143, 317, 606
AsuHPI	GGTGA	3 cut(s)	61, 100, 773
AvaI	CYCGRG	2 cut(s)	293, 323
BanII	GRGCYC	2 cut(s)	282, 342
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	2 cut(s)	211, 797
Bbv12I	GWGCWC	2 cut(s)	282, 342
BbvI	GCAGC	8 cut(s)	30, 173, 176, 179, 212, 475, 658, 668
BccI	CCATC	8 cut(s)	48, 430, 536, 636, 638, 646, 707, 853
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	213, 290, 581
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	144
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	9 cut(s)	19, 162, 165, 168, 226, 250, 489, 657, 672
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	9 cut(s)	20, 163, 166, 169, 227, 251, 490, 658, 673
BmeT110I	CYCGRG	2 cut(s)	293, 323
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	4 cut(s)	84, 388, 519, 696
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	211, 797
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	898
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 46, 644
Bse1I	ACTGG	4 cut(s)	51, 378, 394, 688
Bse8I	GATNNNNATC	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	40, 420
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	21, 46, 644
BseMII	CTCAG	3 cut(s)	416, 591, 800
BseNI	ACTGG	4 cut(s)	51, 378, 394, 688
BseRI	GAGGAG	4 cut(s)	163, 175, 178, 272
BseXI	GCAGC	8 cut(s)	30, 173, 176, 179, 212, 475, 658, 668
Bsh1236I	CGCG	2 cut(s)	214, 315
Bsh1285I	CGRYCG	2 cut(s)	258, 313
BshFI	GGCC	1 cut(s)	249
BsiEI	CGRYCG	2 cut(s)	258, 313
BsiHKAI	GWGCWC	2 cut(s)	282, 342
BsiHKCI	CYCGRG	2 cut(s)	293, 323
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	21, 46, 644
BsmAI	GTCTC	3 cut(s)	213, 290, 581
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	2 cut(s)	293, 323
Bsp1286I	GDGCHC	2 cut(s)	282, 342
Bsp143I	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	9 cut(s)	21, 101, 195, 201, 212, 214, 250, 313, 951
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	3 cut(s)	415, 592, 801
BspFNI	CGCG	2 cut(s)	214, 315
BspPI	GGATC	2 cut(s)	284, 507
BsrI	ACTGG	4 cut(s)	51, 378, 394, 688
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
Bst4CI	ACNGT	4 cut(s)	256, 592, 695, 968
Bst6I	CTCTTC	2 cut(s)	181, 967
BstC8I	GCNNGC	2 cut(s)	23, 822
BstDEI	CTNAG	4 cut(s)	402, 600, 788, 809
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	40, 420
BstFNI	CGCG	2 cut(s)	214, 315
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	3 cut(s)	143, 317, 606
BstKTI	GATC	7 cut(s)	54, 70, 108, 264, 292, 483, 502
BstMAI	GTCTC	3 cut(s)	213, 290, 581
BstMBI	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
BstMCI	CGRYCG	2 cut(s)	258, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 167
BstNSI	RCATGY	1 cut(s)	536
BstUI	CGCG	2 cut(s)	214, 315
BstV1I	GCAGC	8 cut(s)	30, 173, 176, 179, 212, 475, 658, 668
BstV2I	GAAGAC	2 cut(s)	211, 797
BstX2I	RGATCY	2 cut(s)	261, 499
BstYI	RGATCY	2 cut(s)	261, 499
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	40, 420
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	4 cut(s)	44, 387, 700, 782
Cac8I	GCNNGC	2 cut(s)	23, 822
CfoI	GCGC	3 cut(s)	143, 317, 606
Cfr42I	CCGCGG	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	382, 918
CviAII	CATG	3 cut(s)	415, 533, 620
CviQI	GTAC	2 cut(s)	382, 918
DdeI	CTNAG	4 cut(s)	402, 600, 788, 809
DpnI	GATC	7 cut(s)	53, 69, 107, 263, 291, 482, 501
DpnII	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
Eam1104I	CTCTTC	2 cut(s)	181, 967
EarI	CTCTTC	2 cut(s)	181, 967
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	280, 340
Eco24I	GRGCYC	2 cut(s)	282, 342
Eco32I	GATATC	1 cut(s)	442
Eco47III	AGCGCT	1 cut(s)	142
Eco53kI	GAGCTC	2 cut(s)	280, 340
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	293, 323
EcoICRI	GAGCTC	2 cut(s)	280, 340
EcoRI	GAATTC	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	282, 342
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	418, 536, 623
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	414, 532, 619
FauI	CCCGC	3 cut(s)	14, 108, 207
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	480
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	9 cut(s)	19, 162, 165, 168, 226, 250, 489, 657, 672
FokI	GGATG	2 cut(s)	27, 407
FriOI	GRGCYC	2 cut(s)	282, 342
Fsp4HI	GCNGC	9 cut(s)	19, 162, 165, 168, 226, 250, 489, 657, 672
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	3 cut(s)	142, 316, 605
GluI	GCNGC	9 cut(s)	19, 162, 165, 168, 226, 250, 489, 657, 672
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	249
HhaI	GCGC	3 cut(s)	143, 317, 606
Hin1II	CATG	3 cut(s)	418, 536, 623
Hin6I	GCGC	3 cut(s)	141, 315, 604
HinP1I	GCGC	3 cut(s)	141, 315, 604
HincII	GTYRAC	3 cut(s)	58, 616, 937
HindII	GTYRAC	3 cut(s)	58, 616, 937
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	5 cut(s)	8, 298, 407, 547, 830
HphI	GGTGA	3 cut(s)	61, 100, 773
Hpy166II	GTNNAC	4 cut(s)	58, 616, 937, 980
Hpy188I	TCNGA	6 cut(s)	67, 243, 412, 643, 810, 998
Hpy188III	TCNNGA	7 cut(s)	259, 293, 325, 404, 703, 845, 856
Hpy8I	GTNNAC	4 cut(s)	58, 616, 937, 980
HpyAV	CCTTC	4 cut(s)	140, 328, 343, 807
HpyCH4III	ACNGT	4 cut(s)	256, 592, 695, 968
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	97, 532, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 167
HpyF3I	CTNAG	4 cut(s)	402, 600, 788, 809
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	418, 536, 623
HspAI	GCGC	3 cut(s)	141, 315, 604
Ksp22I	TGATCA	1 cut(s)	480
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
LmnI	GCTCC	3 cut(s)	42, 149, 285
Lsp1109I	GCAGC	8 cut(s)	30, 173, 176, 179, 212, 475, 658, 668
LweI	GCATC	4 cut(s)	84, 388, 519, 696
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	29
MalI	GATC	7 cut(s)	53, 69, 107, 263, 291, 482, 501
MboI	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	2 cut(s)	261, 499
MhlI	GDGCHC	2 cut(s)	282, 342
MluCI	AATT	5 cut(s)	665, 687, 720, 778, 839
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	534
MseI	TTAA	2 cut(s)	84, 633
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	21, 214
MunI	CAATTG	1 cut(s)	665
MvnI	CGCG	2 cut(s)	214, 315
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 167
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
NlaIII	CATG	3 cut(s)	418, 536, 623
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	323
PfeI	GAWTC	4 cut(s)	8, 407, 547, 830
PflMI	CCANNNNNTGG	2 cut(s)	46, 644
PkrI	GCNGC	9 cut(s)	20, 163, 166, 169, 227, 251, 490, 658, 673
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	2 cut(s)	282, 342
PsuI	RGATCY	2 cut(s)	261, 499
RsaI	GTAC	2 cut(s)	383, 919
RsaNI	GTAC	2 cut(s)	382, 918
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	2 cut(s)	282, 342
SacII	CCGCGG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	84, 633
SatI	GCNGC	9 cut(s)	19, 162, 165, 168, 226, 250, 489, 657, 672
Sau3AI	GATC	7 cut(s)	51, 67, 105, 261, 289, 480, 499
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	282, 342
SfaNI	GCATC	4 cut(s)	84, 388, 519, 696
Sfr274I	CTCGAG	1 cut(s)	323
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	323, 913
SmoI	CTYRAG	2 cut(s)	323, 913
Sse9I	AATT	5 cut(s)	665, 687, 720, 778, 839
SsiI	CCGC	9 cut(s)	21, 101, 195, 201, 212, 214, 250, 313, 951
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	2 cut(s)	282, 342
TaaI	ACNGT	4 cut(s)	256, 592, 695, 968
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	6 cut(s)	258, 276, 309, 324, 936, 970
TasI	AATT	5 cut(s)	665, 687, 720, 778, 839
TatI	WGTACW	1 cut(s)	917
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	8, 407, 547, 830
Tru1I	TTAA	2 cut(s)	84, 633
Tru9I	TTAA	2 cut(s)	84, 633
TscAI	CASTG	4 cut(s)	51, 394, 700, 789
TseI	GCWGC	8 cut(s)	18, 161, 164, 167, 225, 488, 656, 671
TspDTI	ATGAA	3 cut(s)	431, 462, 722
TspGWI	ACGGA	1 cut(s)	997
TspRI	CASTG	4 cut(s)	51, 394, 700, 789
Van91I	CCANNNNNTGG	2 cut(s)	46, 644
XapI	RAATTY	3 cut(s)	687, 778, 839
XceI	RCATGY	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	936
XspI	CTAG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.