Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

9253525 .. 9256857

Gene Structure 3333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGAGTCGTCGAGCAGTGGTCTCACGTTCAAGCTTCACCCTCTGGTGATGGTCAACATCTCCGACCACTACTCCCGCGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCAACAACCACCACCACAACAACAACAACAACAACGGCGCCGAAGCCGTCGAAACGGCGTCTTCGTCGTCCTCCTCCTCCGCTTCGTCTCCGAGAGTCTTCGGCTGCGTTATCGGCGTCCAGCGTGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAACAAGAGCTCTGTAGATAAAAAGGTTTTCCCCCATTTTTACATACTGGGATGGTACTCTACCGGCTCTGATGCTCAGGAATCTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGCCCAGTTTATGTTCTCCTCAACCCTGTGATCAATCCTGCTCAGAAGGACCTGCCAATTACTATTTACGAAAGTGTGGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAACCGTCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCAGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCACAGCCGAAGAGGTGGAGGAGGACGTACTGCATTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

315

Amino Acids

34.57

Weight (kDa)

9.74

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	180 - 294	5.2e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	879
AccII	CGCG	1 cut(s)	81
AciI	CCGC	6 cut(s)	5, 79, 111, 126, 206, 894
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	721, 782
AcyI	GRCGYC	3 cut(s)	164, 184, 242
AfaI	GTAC	3 cut(s)	392, 862, 934
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	5 cut(s)	34, 273, 773, 788, 889
AluBI	AGCT	9 cut(s)	37, 278, 285, 345, 440, 542, 692, 839, 874
AluI	AGCT	9 cut(s)	37, 278, 285, 345, 440, 542, 692, 839, 874
Alw21I	GWGCWC	2 cut(s)	287, 347
Alw26I	GTCTC	4 cut(s)	29, 93, 218, 295
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	2 cut(s)	313, 328
ApeKI	GCWGC	4 cut(s)	230, 599, 614, 727
ApoI	RAATTY	2 cut(s)	721, 782
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	32, 61
AvaI	CYCGRG	2 cut(s)	313, 328
AvaII	GGWCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	2 cut(s)	287, 347
BarI	GAAGNNNNNNTAC	2 cut(s)	732, 764
BbsI	GAAGAC	3 cut(s)	179, 216, 740
Bbv12I	GWGCWC	2 cut(s)	287, 347
BbvI	GCAGC	4 cut(s)	217, 601, 611, 714
BccI	CCATC	7 cut(s)	46, 113, 381, 439, 581, 650, 796
BceAI	ACGGC	3 cut(s)	157, 177, 197
BclI	TGATCA	2 cut(s)	489, 559
BcoDI	GTCTC	4 cut(s)	29, 93, 218, 295
BfaI	CTAG	2 cut(s)	689, 836
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	5 cut(s)	111, 231, 600, 615, 728
BlsI	GCNGC	5 cut(s)	112, 232, 601, 616, 729
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	2 cut(s)	313, 328
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	2 cut(s)	392, 458
BmsI	GCATC	2 cut(s)	397, 639
BmuI	ACTGGG	2 cut(s)	392, 458
BpiI	GAAGAC	3 cut(s)	179, 216, 740
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	841
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	3 cut(s)	164, 184, 242
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	387, 464
Bse3DI	GCAATG	1 cut(s)	818
Bse8I	GATNNNNATC	1 cut(s)	449
BseGI	GGATG	1 cut(s)	392
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	6 cut(s)	104, 290, 425, 515, 567, 766
BseNI	ACTGG	2 cut(s)	387, 464
BseRI	GAGGAG	5 cut(s)	189, 192, 277, 467, 939
BseXI	GCAGC	4 cut(s)	217, 601, 611, 714
Bsh1236I	CGCG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	2 cut(s)	287, 347
BsiHKCI	CYCGRG	2 cut(s)	313, 328
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	4 cut(s)	29, 93, 218, 295
BsmBI	CGTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	2 cut(s)	313, 328
Bsp1286I	GDGCHC	2 cut(s)	287, 347
Bsp143I	GATC	4 cut(s)	266, 294, 489, 559
BspACI	CCGC	6 cut(s)	5, 79, 111, 126, 206, 894
BspCNI	CTCAG	6 cut(s)	103, 291, 424, 514, 566, 765
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	818
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	387, 464
BssAI	RCCGGY	1 cut(s)	398
BssMI	GATC	4 cut(s)	266, 294, 489, 559
BssNI	GRCGYC	3 cut(s)	164, 184, 242
Bst4CI	ACNGT	3 cut(s)	261, 582, 638
Bst6I	CTCTTC	1 cut(s)	910
BstACI	GRCGYC	3 cut(s)	164, 184, 242
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	7 cut(s)	90, 299, 411, 501, 553, 731, 752
BstF5I	GGATG	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	4 cut(s)	269, 297, 492, 562
BstMAI	GTCTC	4 cut(s)	29, 93, 218, 295
BstMBI	GATC	4 cut(s)	266, 294, 489, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 239
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	217, 601, 611, 714
BstV2I	GAAGAC	3 cut(s)	179, 216, 740
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 643
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	3 cut(s)	70, 173, 231
Csp6I	GTAC	3 cut(s)	391, 861, 933
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	3 cut(s)	391, 861, 933
DdeI	CTNAG	7 cut(s)	90, 299, 411, 501, 553, 731, 752
DinI	GGCGCC	1 cut(s)	165
DpnI	GATC	4 cut(s)	268, 296, 491, 561
DpnII	GATC	4 cut(s)	266, 294, 489, 559
Eam1104I	CTCTTC	1 cut(s)	910
EarI	CTCTTC	1 cut(s)	910
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	285, 345
Eco24I	GRGCYC	2 cut(s)	287, 347
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	2 cut(s)	285, 345
Eco88I	CYCGRG	2 cut(s)	313, 328
EcoICRI	GAGCTC	2 cut(s)	285, 345
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	287, 347
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	1 cut(s)	566
FaiI	YATR	7 cut(s)	380, 425, 471, 564, 695, 832, 900
FatI	CATG	1 cut(s)	562
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	2 cut(s)	489, 559
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	5 cut(s)	111, 231, 600, 615, 728
FokI	GGATG	1 cut(s)	399
FriOI	GRGCYC	2 cut(s)	287, 347
Fsp4HI	GCNGC	5 cut(s)	111, 231, 600, 615, 728
FspBI	CTAG	2 cut(s)	689, 836
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	111, 231, 600, 615, 728
HaeII	RGCGCY	1 cut(s)	167
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	3 cut(s)	70, 173, 231
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	3 cut(s)	164, 184, 242
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	2 cut(s)	58, 880
HindII	GTYRAC	2 cut(s)	58, 880
HindIII	AAGCTT	2 cut(s)	35, 438
HinfI	GANTC	6 cut(s)	8, 221, 303, 416, 630, 773
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	2 cut(s)	32, 61
Hpy166II	GTNNAC	2 cut(s)	58, 880
Hpy188I	TCNGA	9 cut(s)	67, 93, 218, 406, 421, 504, 586, 755, 947
Hpy188III	TCNNGA	6 cut(s)	264, 298, 330, 413, 646, 788
Hpy8I	GTNNAC	2 cut(s)	58, 880
Hpy99I	CGWCG	4 cut(s)	16, 178, 195, 265
HpyAV	CCTTC	2 cut(s)	499, 750
HpyCH4III	ACNGT	3 cut(s)	261, 582, 638
HpyCH4IV	ACGT	3 cut(s)	29, 547, 931
HpyCH4V	TGCA	2 cut(s)	697, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 239
HpyF3I	CTNAG	7 cut(s)	90, 299, 411, 501, 553, 731, 752
HpySE526I	ACGT	3 cut(s)	29, 547, 931
Hsp92I	GRCGYC	3 cut(s)	164, 184, 242
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	1 cut(s)	164
KasI	GGCGCC	1 cut(s)	163
Ksp22I	TGATCA	2 cut(s)	489, 559
Kzo9I	GATC	4 cut(s)	266, 294, 489, 559
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	4 cut(s)	217, 601, 611, 714
LweI	GCATC	2 cut(s)	397, 639
MaeI	CTAG	2 cut(s)	689, 836
MaeII	ACGT	3 cut(s)	29, 547, 931
MalI	GATC	4 cut(s)	268, 296, 491, 561
MboI	GATC	4 cut(s)	266, 294, 489, 559
MboII	GAAGA	8 cut(s)	179, 216, 261, 345, 677, 740, 927, 934
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	287, 347
MluCI	AATT	5 cut(s)	516, 608, 663, 721, 782
Mly113I	GGCGCC	1 cut(s)	164
MlyI	GAGTC	3 cut(s)	17, 230, 297
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	938
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	119, 239
NarI	GGCGCC	1 cut(s)	164
NdeII	GATC	4 cut(s)	266, 294, 489, 559
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	1 cut(s)	165
PaeR7I	CTCGAG	2 cut(s)	313, 328
PcsI	WCGNNNNNNNCGW	2 cut(s)	187, 876
PctI	GAATGC	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	416, 630, 773
PkrI	GCNGC	5 cut(s)	112, 232, 601, 616, 729
PleI	GAGTC	3 cut(s)	16, 229, 297
PluTI	GGCGCC	1 cut(s)	167
PpsI	GAGTC	3 cut(s)	16, 229, 297
PpuMI	RGGWCCY	1 cut(s)	508
Psp124BI	GAGCTC	2 cut(s)	287, 347
Psp5II	RGGWCCY	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PspXI	VCTCGAGB	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	3 cut(s)	392, 862, 934
RsaNI	GTAC	3 cut(s)	391, 861, 933
RseI	CAYNNNNRTG	1 cut(s)	647
SacI	GAGCTC	2 cut(s)	287, 347
SalI	GTCGAC	1 cut(s)	878
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	5 cut(s)	111, 231, 600, 615, 728
Sau3AI	GATC	4 cut(s)	266, 294, 489, 559
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	3 cut(s)	17, 230, 297
SduI	GDGCHC	2 cut(s)	287, 347
SfaNI	GCATC	2 cut(s)	397, 639
SfcI	CTRYAG	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	165
Sfr274I	CTCGAG	2 cut(s)	313, 328
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	2 cut(s)	313, 328
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	3 cut(s)	313, 328, 856
SmoI	CTYRAG	3 cut(s)	313, 328, 856
Sse9I	AATT	5 cut(s)	516, 608, 663, 721, 782
SsiI	CCGC	6 cut(s)	5, 79, 111, 126, 206, 894
SspDI	GGCGCC	1 cut(s)	163
SspMI	CTAG	2 cut(s)	689, 836
SstI	GAGCTC	2 cut(s)	287, 347
TaaI	ACNGT	3 cut(s)	261, 582, 638
TaiI	ACGT	3 cut(s)	32, 550, 934
TaqI	TCGA	7 cut(s)	14, 176, 263, 281, 314, 329, 879
TasI	AATT	5 cut(s)	516, 608, 663, 721, 782
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	416, 630, 773
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	25, 643
TseI	GCWGC	4 cut(s)	230, 599, 614, 727
TspDTI	ATGAA	4 cut(s)	110, 471, 665, 881
TspRI	CASTG	2 cut(s)	25, 643
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	721, 782
XhoI	CTCGAG	2 cut(s)	313, 328
XmiI	GTMKAC	1 cut(s)	879
XspI	CTAG	2 cut(s)	689, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.