Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

80848264 .. 80851316

Gene Structure 3053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG520600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGAGTCGTCGAGCAGTGGTCTCACGTTCAAGCTTCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCCGCGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCAACAACCACCACCACCAACAACAACGGCGCCGAAGCCGTCGAAACGGCGTCGTCCTCCTCCGCTTCGTCTCCGAGAGTCTTCGGCTGCGTCATCGGCGTCCAGCGAGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAACAAGAGCTCTATAAAAAGGTTTTCCCCCAATTTTACATACTGGGATGGTACTCTACCGGCTCTGATGCTCAGGAATCTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTCCTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTGCCAATTACTATTTACGAAAGTGAGCTGCATGTCATTGATGGGGTTCCGCAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGACGGTGGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAACCGTCTGACGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAATGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCATAGCCGGAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

330

Amino Acids

36.54

Weight (kDa)

6.0

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 146	5.1e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	195 - 309	5.8e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	1 cut(s)	81
AciI	CCGC	7 cut(s)	5, 79, 111, 126, 189, 539, 939
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	766, 827
AcyI	GRCGYC	3 cut(s)	156, 176, 225
AfaI	GTAC	3 cut(s)	371, 907, 979
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	6 cut(s)	34, 256, 561, 818, 833, 934
Alw21I	GWGCWC	2 cut(s)	270, 330
Alw26I	GTCTC	5 cut(s)	29, 93, 201, 278, 569
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	296, 311
ApeKI	GCWGC	6 cut(s)	213, 517, 541, 644, 659, 772
ApoI	RAATTY	2 cut(s)	766, 827
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	296, 311
AvaII	GGWCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	270, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BbsI	GAAGAC	2 cut(s)	199, 785
Bbv12I	GWGCWC	2 cut(s)	270, 330
BbvI	GCAGC	6 cut(s)	200, 504, 553, 646, 656, 759
BccI	CCATC	6 cut(s)	113, 360, 418, 524, 695, 841
BceAI	ACGGC	3 cut(s)	149, 169, 189
BclI	TGATCA	2 cut(s)	468, 604
BcoDI	GTCTC	5 cut(s)	29, 93, 201, 278, 569
BfaI	CTAG	2 cut(s)	734, 881
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	7 cut(s)	111, 214, 518, 542, 645, 660, 773
BlsI	GCNGC	7 cut(s)	112, 215, 519, 543, 646, 661, 774
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	2 cut(s)	296, 311
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	157, 537
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	376, 684
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	199, 785
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	428
BsaHI	GRCGYC	3 cut(s)	156, 176, 225
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	428
BseGI	GGATG	1 cut(s)	371
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	6 cut(s)	104, 273, 404, 494, 612, 811
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	4 cut(s)	175, 260, 446, 984
BseXI	GCAGC	6 cut(s)	200, 504, 553, 646, 656, 759
Bsh1236I	CGCG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	270, 330
BsiHKCI	CYCGRG	2 cut(s)	296, 311
BsiSI	CCGG	2 cut(s)	378, 958
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	5 cut(s)	29, 93, 201, 278, 569
BsmBI	CGTCTC	2 cut(s)	201, 569
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	2 cut(s)	296, 311
Bsp1286I	GDGCHC	2 cut(s)	270, 330
Bsp143I	GATC	4 cut(s)	249, 277, 468, 604
BspACI	CCGC	7 cut(s)	5, 79, 111, 126, 189, 539, 939
BspCNI	CTCAG	6 cut(s)	103, 274, 403, 493, 611, 810
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	157, 537
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	863
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	377
BssMI	GATC	4 cut(s)	249, 277, 468, 604
BssNI	GRCGYC	3 cut(s)	156, 176, 225
Bst4CI	ACNGT	4 cut(s)	244, 580, 627, 683
BstACI	GRCGYC	3 cut(s)	156, 176, 225
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	7 cut(s)	90, 282, 390, 480, 598, 776, 797
BstF5I	GGATG	1 cut(s)	371
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	252, 280, 471, 607
BstMAI	GTCTC	5 cut(s)	29, 93, 201, 278, 569
BstMBI	GATC	4 cut(s)	249, 277, 468, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 222
BstNSI	RCATGY	1 cut(s)	524
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	6 cut(s)	200, 504, 553, 646, 656, 759
BstV2I	GAAGAC	2 cut(s)	199, 785
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 688
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	4 cut(s)	70, 165, 205, 214
Csp6I	GTAC	3 cut(s)	370, 906, 978
CviAII	CATG	3 cut(s)	52, 521, 608
CviQI	GTAC	3 cut(s)	370, 906, 978
DdeI	CTNAG	7 cut(s)	90, 282, 390, 480, 598, 776, 797
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	4 cut(s)	251, 279, 470, 606
DpnII	GATC	4 cut(s)	249, 277, 468, 604
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	268, 328
Eco24I	GRGCYC	2 cut(s)	270, 330
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	487
Eco53kI	GAGCTC	2 cut(s)	268, 328
Eco88I	CYCGRG	2 cut(s)	296, 311
EcoICRI	GAGCTC	2 cut(s)	268, 328
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	270, 330
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	201, 569
FaeI	CATG	3 cut(s)	55, 524, 611
FatI	CATG	3 cut(s)	51, 520, 607
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	2 cut(s)	468, 604
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	7 cut(s)	111, 214, 518, 542, 645, 660, 773
FokI	GGATG	1 cut(s)	378
FriOI	GRGCYC	2 cut(s)	270, 330
Fsp4HI	GCNGC	7 cut(s)	111, 214, 518, 542, 645, 660, 773
FspBI	CTAG	2 cut(s)	734, 881
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	7 cut(s)	111, 214, 518, 542, 645, 660, 773
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	2 cut(s)	378, 958
HgaI	GACGC	4 cut(s)	70, 165, 205, 214
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	3 cut(s)	156, 176, 225
Hin1II	CATG	3 cut(s)	55, 524, 611
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	58, 925
HindII	GTYRAC	2 cut(s)	58, 925
HindIII	AAGCTT	2 cut(s)	35, 417
HinfI	GANTC	6 cut(s)	8, 204, 286, 395, 675, 818
HpaII	CCGG	2 cut(s)	378, 958
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	58, 925
Hpy188I	TCNGA	9 cut(s)	67, 93, 201, 385, 400, 483, 631, 800, 992
Hpy188III	TCNNGA	6 cut(s)	247, 281, 313, 392, 691, 833
Hpy8I	GTNNAC	2 cut(s)	58, 925
Hpy99I	CGWCG	4 cut(s)	16, 170, 181, 248
HpyAV	CCTTC	2 cut(s)	478, 795
HpyCH4III	ACNGT	4 cut(s)	244, 580, 627, 683
HpyCH4IV	ACGT	3 cut(s)	29, 592, 976
HpyCH4V	TGCA	2 cut(s)	520, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 222
HpyF3I	CTNAG	7 cut(s)	90, 282, 390, 480, 598, 776, 797
HpySE526I	ACGT	3 cut(s)	29, 592, 976
Hsp92I	GRCGYC	3 cut(s)	156, 176, 225
Hsp92II	CATG	3 cut(s)	55, 524, 611
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	468, 604
Kzo9I	GATC	4 cut(s)	249, 277, 468, 604
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	6 cut(s)	200, 504, 553, 646, 656, 759
LweI	GCATC	2 cut(s)	376, 684
MaeI	CTAG	2 cut(s)	734, 881
MaeII	ACGT	3 cut(s)	29, 592, 976
MalI	GATC	4 cut(s)	251, 279, 470, 606
MboI	GATC	4 cut(s)	249, 277, 468, 604
MboII	GAAGA	6 cut(s)	199, 244, 328, 722, 785, 979
MfeI	CAATTG	2 cut(s)	570, 653
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	270, 330
MluCI	AATT	8 cut(s)	350, 495, 546, 570, 653, 708, 766, 827
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	3 cut(s)	17, 213, 280
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	2 cut(s)	378, 958
MunI	CAATTG	2 cut(s)	570, 653
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	119, 222
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	4 cut(s)	249, 277, 468, 604
NlaIII	CATG	3 cut(s)	55, 524, 611
NlaIV	GGNNCC	2 cut(s)	157, 537
NspI	RCATGY	1 cut(s)	524
PaeR7I	CTCGAG	2 cut(s)	296, 311
PfeI	GAWTC	3 cut(s)	395, 675, 818
PkrI	GCNGC	7 cut(s)	112, 215, 519, 543, 646, 661, 774
PleI	GAGTC	3 cut(s)	16, 212, 280
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	3 cut(s)	16, 212, 280
PpuMI	RGGWCCY	1 cut(s)	487
Psp124BI	GAGCTC	2 cut(s)	270, 330
Psp5II	RGGWCCY	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	157, 537
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PspXI	VCTCGAGB	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	3 cut(s)	371, 907, 979
RsaNI	GTAC	3 cut(s)	370, 906, 978
RseI	CAYNNNNRTG	1 cut(s)	692
SacI	GAGCTC	2 cut(s)	270, 330
SalI	GTCGAC	1 cut(s)	923
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	7 cut(s)	111, 214, 518, 542, 645, 660, 773
Sau3AI	GATC	4 cut(s)	249, 277, 468, 604
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	3 cut(s)	17, 213, 280
SduI	GDGCHC	2 cut(s)	270, 330
SfaNI	GCATC	2 cut(s)	376, 684
SfoI	GGCGCC	1 cut(s)	157
Sfr274I	CTCGAG	2 cut(s)	296, 311
SinI	GGWCC	1 cut(s)	487
SlaI	CTCGAG	2 cut(s)	296, 311
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	3 cut(s)	296, 311, 901
SmoI	CTYRAG	3 cut(s)	296, 311, 901
Sse9I	AATT	8 cut(s)	350, 495, 546, 570, 653, 708, 766, 827
SsiI	CCGC	7 cut(s)	5, 79, 111, 126, 189, 539, 939
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	734, 881
SstI	GAGCTC	2 cut(s)	270, 330
TaaI	ACNGT	4 cut(s)	244, 580, 627, 683
TaiI	ACGT	3 cut(s)	32, 595, 979
TaqI	TCGA	7 cut(s)	14, 168, 246, 264, 297, 312, 924
TasI	AATT	8 cut(s)	350, 495, 546, 570, 653, 708, 766, 827
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	395, 675, 818
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	25, 688
TseI	GCWGC	6 cut(s)	213, 517, 541, 644, 659, 772
TspDTI	ATGAA	4 cut(s)	110, 450, 710, 926
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	2 cut(s)	25, 688
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	766, 827
XceI	RCATGY	1 cut(s)	524
XhoI	CTCGAG	2 cut(s)	296, 311
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	2 cut(s)	734, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.