Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

81322083 .. 81325048

Gene Structure 2966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTGTTGTTCTGAGCTGCATGTCATTGATGGGGTTCCACAGCTAATTTTTGTCAGTTCAAGCTACATCATTGAGACGGTGGAAGCTGAATTCATCTCAGTTGATCATGTTCCTCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGCCATCAAGATGCTCAATAGCAGAGTTAAGAGTGCTTCATCACTATCTTCTAGCTATGCTGAAAGGAGAAATACCTTGTGAGAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCAGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCGAGTACAATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

5.21

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	28 - 128	1.6e-17	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	131
AcsI	RAATTY	3 cut(s)	89, 238, 299
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	60, 290, 305
AluBI	AGCT	6 cut(s)	16, 43, 63, 86, 209, 356
AluI	AGCT	6 cut(s)	16, 43, 63, 86, 209, 356
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	16, 143, 244
ApoI	RAATTY	3 cut(s)	89, 238, 299
AvaI	CYCGRG	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	3, 155, 231
BccI	CCATC	5 cut(s)	23, 125, 133, 166, 313
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	206, 353
BisI	GCNGC	3 cut(s)	17, 144, 245
BlsI	GCNGC	3 cut(s)	18, 145, 246
BmeT110I	CYCGRG	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	111, 283
BseXI	GCAGC	3 cut(s)	3, 155, 231
BsiHKCI	CYCGRG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	103
BspCNI	CTCAG	3 cut(s)	4, 110, 282
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	335
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	12, 97, 248, 269
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	3, 155, 231
BstV2I	GAAGAC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	20, 107
CviJI	RGCY	6 cut(s)	16, 43, 63, 86, 209, 356
CviKI_1	RGCY	6 cut(s)	16, 43, 63, 86, 209, 356
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	4 cut(s)	12, 97, 248, 269
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	89, 238
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	23, 110
FaiI	YATR	4 cut(s)	21, 108, 212, 349
FatI	CATG	2 cut(s)	19, 106
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	17, 144, 245
Fsp4HI	GCNGC	3 cut(s)	17, 144, 245
FspBI	CTAG	2 cut(s)	206, 353
GluI	GCNGC	3 cut(s)	17, 144, 245
Hin1II	CATG	2 cut(s)	23, 110
HinfI	GANTC	1 cut(s)	290
Hpy188I	TCNGA	3 cut(s)	13, 130, 272
Hpy188III	TCNNGA	2 cut(s)	162, 305
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	4 cut(s)	12, 97, 248, 269
Hsp92II	CATG	2 cut(s)	23, 110
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	279, 294
Lsp1109I	GCAGC	3 cut(s)	3, 155, 231
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	206, 353
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	194, 257
MfeI	CAATTG	1 cut(s)	152
MluCI	AATT	5 cut(s)	45, 89, 152, 238, 299
MnlI	CCTC	2 cut(s)	123, 128
MseI	TTAA	2 cut(s)	120, 182
MslI	CAYNNNNRTG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	152
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	23, 110
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	18, 145, 246
PspN4I	GGNNCC	1 cut(s)	36
PspXI	VCTCGAGB	1 cut(s)	373
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	120, 182
SatI	GCNGC	3 cut(s)	17, 144, 245
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	9 cut(s)	18, 45, 65, 88, 139, 211, 232, 278, 358
SfaNI	GCATC	1 cut(s)	155
Sfr274I	CTCGAG	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	5 cut(s)	45, 89, 152, 238, 299
SspMI	CTAG	2 cut(s)	206, 353
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	374
TasI	AATT	5 cut(s)	45, 89, 152, 238, 299
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	120, 182
Tru9I	TTAA	2 cut(s)	120, 182
TseI	GCWGC	3 cut(s)	16, 143, 244
TspDTI	ATGAA	2 cut(s)	82, 182
Van91I	CCANNNNNTGG	1 cut(s)	131
XapI	RAATTY	3 cut(s)	89, 238, 299
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	373
XspI	CTAG	2 cut(s)	206, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.