Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

34749819 .. 34753774

Gene Structure 3956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41360.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGGAGTCGTCGAGCAGCGGTCTCACCTTCAAGCTCCACCCTCTGGTGATGGTCAACATCTCCGACCACTACTCCCGTGTCAAGTCTCAGATGAACCCTCCCATCGCCTCCCACAGCGCCACGGCAACAACAACCACCAACGGCTCCGAAGCCGCCGTCGAAACGGCGTCGTCTTCCTCGTCCTCCGCCGCACCGTCCCCGCGAGTTTTCGGCTGCGTCATCGGCGTCCAGCGAGGCCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCCGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAGCAGGAGCTCTATAAGAAGGTTTTCCCTAATTTTTACATACTGGGATGGTACTCGACCGGGTCTGATGCTCAGGAATCCGATATGACTATTCACAAAGCTTTGATGGATATCAATGAGAGCCCTGTTTATGTTCTCCTCAACCCTGTGATCAATCCTGCTCAGAAGGACCTCCCGATCACTATTTACGAGAGTGAGCTGCATGTCATTGATGGGGTTCCACAGCTAATATTTGTCAGTTCAAGCTACACAATTGAGACGGTGGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAACCATCTGATGGAGGTTCAGCTGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCAAGCTATGCAGAAAGGAGATATACCCTGTGAAAATTCACTGCTAAGACAAGTATCAAGTCTTCTGAGAAGGCTGCCAGCTGTTGAATCAGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGGTTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAATACTGCTTACGACAGGCATAGCCGAAGAGGTGGAGGAGGACGAACTACTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

332

Amino Acids

36.55

Weight (kDa)

6.0

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 147	5.5e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	196 - 310	6.6e-33	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	46, 635
AccI	GTMKAC	1 cut(s)	927
AccII	CGCG	1 cut(s)	205
AciI	CCGC	7 cut(s)	5, 21, 156, 189, 192, 203, 241
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	769, 830
AcyI	GRCGYC	2 cut(s)	170, 228
AfaI	GTAC	2 cut(s)	374, 910
AfiI	CCNNNNNNNGG	2 cut(s)	46, 635
AgsI	TTSAA	7 cut(s)	34, 259, 564, 737, 821, 836, 937
Alw21I	GWGCWC	2 cut(s)	273, 333
Alw26I	GTCTC	4 cut(s)	29, 93, 281, 572
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	3 cut(s)	284, 299, 314
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	6 cut(s)	18, 216, 520, 647, 662, 808
ApoI	RAATTY	2 cut(s)	769, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	19, 61
AvaI	CYCGRG	3 cut(s)	284, 299, 314
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	273, 333, 446
BarI	GAAGNNNNNNTAC	2 cut(s)	780, 812
BbsI	GAAGAC	2 cut(s)	168, 788
Bbv12I	GWGCWC	2 cut(s)	273, 333
BbvI	GCAGC	6 cut(s)	30, 203, 507, 634, 649, 795
BccI	CCATC	9 cut(s)	46, 113, 363, 421, 527, 629, 637, 698, 844
BceAI	ACGGC	4 cut(s)	141, 143, 160, 183
BclI	TGATCA	2 cut(s)	471, 607
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	29, 93, 281, 572
BfaI	CTAG	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	123
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	9 cut(s)	19, 156, 192, 217, 241, 521, 648, 663, 809
BlsI	GCNGC	9 cut(s)	20, 157, 193, 218, 242, 522, 649, 664, 810
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	3 cut(s)	284, 299, 314
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	148, 540
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	379, 687
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	168, 788
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	889
BpuMI	CCSGG	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	170, 228
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 635
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	866
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	374
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	46, 635
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	5 cut(s)	104, 407, 497, 615, 791
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	3 cut(s)	263, 449, 987
BseXI	GCAGC	6 cut(s)	30, 203, 507, 634, 649, 795
Bsh1236I	CGCG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	273, 333
BsiHKCI	CYCGRG	3 cut(s)	284, 299, 314
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	46, 635
BsmAI	GTCTC	4 cut(s)	29, 93, 281, 572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	3 cut(s)	284, 299, 314
Bsp1286I	GDGCHC	3 cut(s)	273, 333, 446
Bsp143I	GATC	5 cut(s)	252, 280, 471, 498, 607
BspACI	CCGC	7 cut(s)	5, 21, 156, 189, 192, 203, 241
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	5 cut(s)	103, 406, 496, 614, 792
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	148, 540
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	866
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	5 cut(s)	252, 280, 471, 498, 607
BssNI	GRCGYC	2 cut(s)	170, 228
Bst4CI	ACNGT	4 cut(s)	198, 247, 583, 686
Bst6I	CTCTTC	1 cut(s)	958
BstACI	GRCGYC	2 cut(s)	170, 228
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	6 cut(s)	90, 393, 483, 601, 779, 800
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	5 cut(s)	255, 283, 474, 501, 610
BstMAI	GTCTC	4 cut(s)	29, 93, 281, 572
BstMBI	GATC	5 cut(s)	252, 280, 471, 498, 607
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	6 cut(s)	30, 203, 507, 634, 649, 795
BstV2I	GAAGAC	2 cut(s)	168, 788
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	2 cut(s)	691, 773
Cac8I	GCNNGC	1 cut(s)	813
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	3 cut(s)	159, 208, 217
Csp6I	GTAC	2 cut(s)	373, 909
CviAII	CATG	2 cut(s)	524, 611
CviQI	GTAC	2 cut(s)	373, 909
DdeI	CTNAG	6 cut(s)	90, 393, 483, 601, 779, 800
DpnI	GATC	5 cut(s)	254, 282, 473, 500, 609
DpnII	GATC	5 cut(s)	252, 280, 471, 498, 607
Eam1104I	CTCTTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	958
EciI	GGCGGA	2 cut(s)	20, 178
Ecl136II	GAGCTC	2 cut(s)	271, 331
Eco24I	GRGCYC	3 cut(s)	273, 333, 446
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	2 cut(s)	271, 331
Eco88I	CYCGRG	3 cut(s)	284, 299, 314
EcoICRI	GAGCTC	2 cut(s)	271, 331
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	3 cut(s)	273, 333, 446
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	2 cut(s)	527, 614
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	523, 610
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	2 cut(s)	471, 607
FblI	GTMKAC	1 cut(s)	927
Fnu4HI	GCNGC	9 cut(s)	19, 156, 192, 217, 241, 521, 648, 663, 809
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	3 cut(s)	273, 333, 446
Fsp4HI	GCNGC	9 cut(s)	19, 156, 192, 217, 241, 521, 648, 663, 809
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	9 cut(s)	19, 156, 192, 217, 241, 521, 648, 663, 809
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	3 cut(s)	159, 208, 217
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	170, 228
Hin1II	CATG	2 cut(s)	527, 614
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	2 cut(s)	58, 928
HindII	GTYRAC	2 cut(s)	58, 928
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	5 cut(s)	8, 289, 398, 678, 821
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	19, 61
Hpy166II	GTNNAC	2 cut(s)	58, 928
Hpy188I	TCNGA	9 cut(s)	67, 93, 151, 388, 403, 486, 634, 801, 995
Hpy188III	TCNNGA	7 cut(s)	250, 284, 316, 395, 496, 694, 836
Hpy8I	GTNNAC	2 cut(s)	58, 928
Hpy99I	CGWCG	4 cut(s)	16, 164, 175, 251
HpyAV	CCTTC	4 cut(s)	40, 334, 481, 798
HpyCH4III	ACNGT	4 cut(s)	198, 247, 583, 686
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	523, 650, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	6 cut(s)	90, 393, 483, 601, 779, 800
HpySE526I	ACGT	1 cut(s)	595
Hsp92I	GRCGYC	2 cut(s)	170, 228
Hsp92II	CATG	2 cut(s)	527, 614
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	2 cut(s)	471, 607
Kzo9I	GATC	5 cut(s)	252, 280, 471, 498, 607
LmnI	GCTCC	4 cut(s)	42, 152, 276, 328
Lsp1109I	GCAGC	6 cut(s)	30, 203, 507, 634, 649, 795
LweI	GCATC	2 cut(s)	379, 687
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	5 cut(s)	254, 282, 473, 500, 609
MboI	GATC	5 cut(s)	252, 280, 471, 498, 607
MboII	GAAGA	7 cut(s)	168, 247, 331, 725, 788, 975, 982
MfeI	CAATTG	2 cut(s)	573, 656
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	273, 333, 446
MluCI	AATT	6 cut(s)	352, 573, 656, 711, 769, 830
MlyI	GAGTC	2 cut(s)	17, 283
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	3 cut(s)	21, 647, 815
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	382
MunI	CAATTG	2 cut(s)	573, 656
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	5 cut(s)	252, 280, 471, 498, 607
NlaIII	CATG	2 cut(s)	527, 614
NlaIV	GGNNCC	2 cut(s)	148, 540
NspI	RCATGY	1 cut(s)	527
PaeR7I	CTCGAG	2 cut(s)	299, 314
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 924
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	398, 678, 821
PflFI	GACNNNGTC	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	46, 635
PkrI	GCNGC	9 cut(s)	20, 157, 193, 218, 242, 522, 649, 664, 810
PleI	GAGTC	2 cut(s)	16, 283
PpsI	GAGTC	2 cut(s)	16, 283
PpuMI	RGGWCCY	1 cut(s)	490
Psp124BI	GAGCTC	2 cut(s)	273, 333
Psp5II	RGGWCCY	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	148, 540
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PspXI	VCTCGAGB	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	2 cut(s)	647, 815
RsaI	GTAC	2 cut(s)	374, 910
RsaNI	GTAC	2 cut(s)	373, 909
RseI	CAYNNNNRTG	1 cut(s)	695
SacI	GAGCTC	2 cut(s)	273, 333
SalI	GTCGAC	1 cut(s)	926
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	9 cut(s)	19, 156, 192, 217, 241, 521, 648, 663, 809
Sau3AI	GATC	5 cut(s)	252, 280, 471, 498, 607
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	2 cut(s)	17, 283
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	3 cut(s)	273, 333, 446
SfaNI	GCATC	2 cut(s)	379, 687
Sfr274I	CTCGAG	2 cut(s)	299, 314
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	2 cut(s)	299, 314
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	3 cut(s)	299, 314, 904
SmoI	CTYRAG	3 cut(s)	299, 314, 904
Sse9I	AATT	6 cut(s)	352, 573, 656, 711, 769, 830
SsiI	CCGC	7 cut(s)	5, 21, 156, 189, 192, 203, 241
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	1 cut(s)	884
SstI	GAGCTC	2 cut(s)	273, 333
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	4 cut(s)	198, 247, 583, 686
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	8 cut(s)	14, 162, 249, 267, 300, 315, 377, 927
TasI	AATT	6 cut(s)	352, 573, 656, 711, 769, 830
TatI	WGTACW	1 cut(s)	908
TauI	GCSGC	3 cut(s)	158, 194, 243
TfiI	GAWTC	3 cut(s)	398, 678, 821
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	691, 780
TseI	GCWGC	6 cut(s)	18, 216, 520, 647, 662, 808
TspDTI	ATGAA	3 cut(s)	110, 713, 929
TspRI	CASTG	2 cut(s)	691, 780
Tth111I	GACNNNGTC	1 cut(s)	382
Van91I	CCANNNNNTGG	2 cut(s)	46, 635
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	769, 830
XceI	RCATGY	1 cut(s)	527
XhoI	CTCGAG	2 cut(s)	299, 314
XmiI	GTMKAC	1 cut(s)	927
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.