Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2825513 .. 2827530

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGCTGGGCCAGATTTAAGTCACCAACTCGGAAATTAAACTGCAATGAAATCACAAATAAAATAAAAAGAAAAGAGAAGGCAGAGAAGAGCAAAAGCAAAAACCGAAACCGGAGCTCCGAAGAGCCAAAAAACCAAAACCACCAAATCTCGAAATCGGAAAAAATGGCGGAATCCTCCAGCAGCGGGCTGACGTTCAAGCTCCACCCACTGGTGATCGTCAACATCTCCGACCACTACTCTAGGGTTAAGTCCCAGATGCACCCGCCCGTCACCAACACTTCGACACCACCACCGCCCAACAACGGCGCCGACGGAGCAGTAGAAGCAGCATCCTCTTCTTCCTTCTCCGACCCTGCCTCCGCCTCGTGTCCGCGGGTCTTCGGCTGCGTTATCGGGGTTCAGAGGGGCCGCACGGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGCAACTCACTCCCTCGACCGCGCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCGCACTTTTACATACTGGGGTGGTACTCTACTGGAACAGATGCTCAGGAATCTGACATGAACATCCACAAAGCTCTGATGGATATCAATGAAAGCCCTGTTTATGTTATTCTCAACCCTATGATCAATGCTGCTCAAAAGGATCTCCCAATCACTATTTACGAAAGTGAGATGCATGTCATTGATGGGATTCCACAGCTAATCTTTGTCAGCTCAAGCTATACCATTGAGACGGTGGAAGCTGAGCGCATTTCAGTTGATCGATGTTGCCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

266

Amino Acids

29.67

Weight (kDa)

8.2

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	62 - 204	7.6e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccII	CGCG	2 cut(s)	376, 477
AclWI	GGATC	2 cut(s)	446, 669
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	3 cut(s)	186, 211, 305
AgsI	TTSAA	2 cut(s)	199, 430
Alw21I	GWGCWC	3 cut(s)	119, 444, 504
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	2 cut(s)	446, 669
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	2 cut(s)	9, 409
ApeKI	GCWGC	4 cut(s)	183, 329, 387, 650
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	3 cut(s)	311, 479, 768
AspS9I	GGNCC	2 cut(s)	9, 409
AsuHPI	GGTGA	3 cut(s)	15, 226, 265
AvaI	CYCGRG	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	3 cut(s)	119, 444, 504
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	3 cut(s)	119, 444, 504
BbvI	GCAGC	4 cut(s)	195, 341, 374, 637
BccI	CCATC	2 cut(s)	592, 698
BceAI	ACGGC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	312
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	5 cut(s)	184, 330, 388, 412, 651
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	5 cut(s)	185, 331, 389, 413, 652
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	9, 409
BmiI	GGNNCC	2 cut(s)	310, 410
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	4 cut(s)	249, 341, 550, 681
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	718
Bsa29I	ATCGAT	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 344, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 211, 305
Bse1I	ACTGG	3 cut(s)	216, 540, 556
Bse3DI	GCAATG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	332, 582
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	186, 211, 305
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	578, 753
BseNI	ACTGG	3 cut(s)	216, 540, 556
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	195, 341, 374, 637
BseYI	CCCAGC	1 cut(s)	6
Bsh1236I	CGCG	2 cut(s)	376, 477
Bsh1285I	CGRYCG	2 cut(s)	420, 475
BshFI	GGCC	2 cut(s)	11, 411
BshNI	GGYRCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	781
BsiEI	CGRYCG	2 cut(s)	420, 475
BsiHKAI	GWGCWC	3 cut(s)	119, 444, 504
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	186, 211, 305
BsmAI	GTCTC	1 cut(s)	743
BsmBI	CGTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	11, 411
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	119, 444, 504
Bsp143I	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
Bsp1720I	GCTNAGC	1 cut(s)	762
BspANI	GGCC	2 cut(s)	11, 411
BspCNI	CTCAG	2 cut(s)	577, 754
BspDI	ATCGAT	1 cut(s)	781
BspFNI	CGCG	2 cut(s)	376, 477
BspLI	GGNNCC	2 cut(s)	310, 410
BspPI	GGATC	2 cut(s)	446, 669
BspQI	GCTCTTC	2 cut(s)	83, 117
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	216, 540, 556
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	418, 754
Bst6I	CTCTTC	3 cut(s)	83, 117, 343
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	564, 762
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	332, 582
BstFNI	CGCG	2 cut(s)	376, 477
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	3 cut(s)	311, 479, 768
BstKTI	GATC	6 cut(s)	219, 426, 454, 645, 664, 781
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
BstMCI	CGRYCG	2 cut(s)	420, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 326
BstNSI	RCATGY	1 cut(s)	698
BstUI	CGCG	2 cut(s)	376, 477
BstV1I	GCAGC	4 cut(s)	195, 341, 374, 637
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	2 cut(s)	423, 661
BstYI	RGATCY	2 cut(s)	423, 661
Bsu15I	ATCGAT	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	11, 411
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	332, 582
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	3 cut(s)	311, 479, 768
Cfr13I	GGNCC	2 cut(s)	9, 409
Cfr42I	CCGCGG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	2 cut(s)	577, 695
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	564, 762
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	6 cut(s)	218, 425, 453, 644, 663, 780
DpnII	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
Eam1104I	CTCTTC	3 cut(s)	83, 117, 343
EarI	CTCTTC	3 cut(s)	83, 117, 343
EciI	GGCGGA	2 cut(s)	185, 352
Ecl136II	GAGCTC	3 cut(s)	117, 442, 502
Eco24I	GRGCYC	3 cut(s)	119, 444, 504
Eco32I	GATATC	1 cut(s)	604
Eco53kI	GAGCTC	3 cut(s)	117, 442, 502
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	3 cut(s)	117, 442, 502
EcoRV	GATATC	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	3 cut(s)	119, 444, 504
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	743
FaeI	CATG	2 cut(s)	580, 698
FaiI	YATR	7 cut(s)	507, 533, 578, 624, 641, 696, 741
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	576, 694
FauI	CCCGC	4 cut(s)	179, 273, 369, 528
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	5 cut(s)	184, 330, 388, 412, 651
FokI	GGATG	2 cut(s)	319, 569
FriOI	GRGCYC	3 cut(s)	119, 444, 504
Fsp4HI	GCNGC	5 cut(s)	184, 330, 388, 412, 651
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	3 cut(s)	310, 478, 767
GluI	GCNGC	5 cut(s)	184, 330, 388, 412, 651
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	11, 411
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	3 cut(s)	311, 479, 768
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	580, 698
Hin6I	GCGC	3 cut(s)	309, 477, 766
HinP1I	GCGC	3 cut(s)	309, 477, 766
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	173, 569, 709
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	3 cut(s)	15, 226, 265
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	8 cut(s)	33, 121, 160, 232, 352, 405, 574, 597
Hpy188III	TCNNGA	4 cut(s)	151, 421, 487, 566
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	4 cut(s)	73, 355, 490, 505
HpyCH4III	ACNGT	2 cut(s)	418, 754
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	45, 262, 458, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 326
HpyF3I	CTNAG	2 cut(s)	564, 762
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	580, 698
HspAI	GCGC	3 cut(s)	309, 477, 766
KasI	GGCGCC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	642
KspI	CCGCGG	1 cut(s)	377
Kzo9I	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
LguI	GCTCTTC	2 cut(s)	83, 117
LmnI	GCTCC	5 cut(s)	114, 122, 207, 317, 447
Lsp1109I	GCAGC	4 cut(s)	195, 341, 374, 637
LweI	GCATC	4 cut(s)	249, 341, 550, 681
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	21, 271
MalI	GATC	6 cut(s)	218, 425, 453, 644, 663, 780
MboI	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
MboII	GAAGA	7 cut(s)	100, 134, 330, 333, 373, 418, 502
MflI	RGATCY	2 cut(s)	423, 661
MhlI	GDGCHC	3 cut(s)	119, 444, 504
MluCI	AATT	1 cut(s)	35
Mly113I	GGCGCC	1 cut(s)	309
MmeI	TCCRAC	2 cut(s)	255, 375
MnlI	CCTC	8 cut(s)	187, 346, 370, 376, 399, 455, 479, 494
Mph1103I	ATGCAT	1 cut(s)	696
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	4 cut(s)	18, 38, 249, 796
MspA1I	CMGCKG	2 cut(s)	186, 376
MspI	CCGG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	376, 477
MwoI	GCNNNNNNNGC	2 cut(s)	317, 326
NarI	GGCGCC	1 cut(s)	309
NdeII	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
NlaIII	CATG	2 cut(s)	580, 698
NlaIV	GGNNCC	2 cut(s)	310, 410
NmuCI	GTSAC	2 cut(s)	21, 271
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	485
PciSI	GCTCTTC	2 cut(s)	83, 117
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	173, 569, 709
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	185, 331, 389, 413, 652
PluTI	GGCGCC	1 cut(s)	312
Psp124BI	GAGCTC	3 cut(s)	119, 444, 504
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	310, 410
PspPI	GGNCC	2 cut(s)	9, 409
PsuI	RGATCY	2 cut(s)	423, 661
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SacI	GAGCTC	3 cut(s)	119, 444, 504
SacII	CCGCGG	1 cut(s)	377
SapI	GCTCTTC	2 cut(s)	83, 117
SaqAI	TTAA	4 cut(s)	18, 38, 249, 796
SatI	GCNGC	5 cut(s)	184, 330, 388, 412, 651
Sau3AI	GATC	6 cut(s)	216, 423, 451, 642, 661, 778
Sau96I	GGNCC	2 cut(s)	9, 409
SduI	GDGCHC	3 cut(s)	119, 444, 504
SfaNI	GCATC	4 cut(s)	249, 341, 550, 681
SfoI	GGCGCC	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	377
SgrBI	CCGCGG	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	485, 733
SmoI	CTYRAG	2 cut(s)	485, 733
Sse9I	AATT	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	3 cut(s)	119, 444, 504
TaaI	ACNGT	2 cut(s)	418, 754
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	7 cut(s)	152, 284, 420, 438, 471, 486, 781
TasI	AATT	1 cut(s)	35
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	3 cut(s)	173, 569, 709
Tru1I	TTAA	4 cut(s)	18, 38, 249, 796
Tru9I	TTAA	4 cut(s)	18, 38, 249, 796
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	21, 271
TseI	GCWGC	4 cut(s)	183, 329, 387, 650
Tsp45I	GTSAC	2 cut(s)	21, 271
TspDTI	ATGAA	3 cut(s)	63, 593, 624
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	211
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.