Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

75701570 .. 75703735

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG541800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAATTACAGCAAAGGAGTTCAAGCTACATCATTGAGACGGTGGAAGCTGAATTCATCTCAGTTGATCATGTTTCTCATCTTAAACCATCTGATGGAGGTTCAGCTGCAACTCAATGAATGCACAGTGCCATCAAGATGCTCAATAGCAGAGTTAAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAGAATTTGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCGAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCATAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

145

Amino Acids

16.66

Weight (kDa)

8.76

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	51 - 124	1.8e-17	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	1 cut(s)	384
AcsI	RAATTY	3 cut(s)	52, 211, 272
AfaI	GTAC	2 cut(s)	352, 424
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	23, 263, 278, 379
AluBI	AGCT	6 cut(s)	26, 49, 106, 182, 329, 364
AluI	AGCT	6 cut(s)	26, 49, 106, 182, 329, 364
Alw26I	GTCTC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	106, 217
ApoI	RAATTY	3 cut(s)	52, 211, 272
AvaI	CYCGRG	1 cut(s)	346
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	93, 204
BccI	CCATC	4 cut(s)	88, 96, 139, 286
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	179, 326
BisI	GCNGC	2 cut(s)	107, 218
BlsI	GCNGC	2 cut(s)	108, 219
BmeT110I	CYCGRG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	74, 256
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	93, 204
BsiHKCI	CYCGRG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	384
BspCNI	CTCAG	2 cut(s)	73, 255
BsrDI	GCAATG	1 cut(s)	308
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	42, 127
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	60, 221, 242
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	93, 204
BstV2I	GAAGAC	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	351, 423
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	7 cut(s)	26, 49, 106, 182, 329, 364, 402
CviKI_1	RGCY	7 cut(s)	26, 49, 106, 182, 329, 364, 402
CviQI	GTAC	2 cut(s)	351, 423
DdeI	CTNAG	3 cut(s)	60, 221, 242
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	71, 185, 322, 390, 399
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	107, 218
Fsp4HI	GCNGC	2 cut(s)	107, 218
FspBI	CTAG	2 cut(s)	179, 326
GluI	GCNGC	2 cut(s)	107, 218
Hin1II	CATG	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	93, 245, 437
Hpy188III	TCNNGA	2 cut(s)	135, 278
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	42, 127
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	109, 123, 187
HpyF3I	CTNAG	3 cut(s)	60, 221, 242
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	3 cut(s)	267, 350, 379
Lsp1109I	GCAGC	2 cut(s)	93, 204
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	179, 326
MaeII	ACGT	1 cut(s)	421
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	4 cut(s)	167, 230, 417, 424
MluCI	AATT	4 cut(s)	4, 52, 211, 272
MnlI	CCTC	4 cut(s)	91, 401, 407, 410
MseI	TTAA	2 cut(s)	83, 155
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	108, 219
PspXI	VCTCGAGB	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	352, 424
RsaNI	GTAC	2 cut(s)	351, 423
RseI	CAYNNNNRTG	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	83, 155
SatI	GCNGC	2 cut(s)	107, 218
Sau3AI	GATC	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	4 cut(s)	4, 52, 211, 272
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	2 cut(s)	179, 326
TaaI	ACNGT	2 cut(s)	42, 127
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	347, 369
TasI	AATT	4 cut(s)	4, 52, 211, 272
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	83, 155
Tru9I	TTAA	2 cut(s)	83, 155
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	2 cut(s)	106, 217
TspDTI	ATGAA	5 cut(s)	17, 45, 132, 155, 371
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	3 cut(s)	52, 211, 272
XhoI	CTCGAG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	179, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.