Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

74254038 .. 74257349

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG531300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGGAGTCATCGAGCAGTGGTCTCACGTTCAAGCTCCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCCGAGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCAACAACCACCACCACCAACAACAACGGCGCCGAAGCCGTCGAAACGGCGTCGTCTTCCTCCTCCTCCTCCTCCGCTTCGTCTCCGAGAGTCTTCGGCTGCGTCATCGGCGTCCAGCGTGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAACAAGAGCTCTATAAAAAGGTTTTCCCTCATTTTTACATACTGGGATGGTACTCTACCGGCTCTGATGCTCAGGAATCTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTACTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTCCCAATCACTATTTACGAAAGTGAGCTGCATGTCATTGATGGGGTTCCGCAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGACAGTAGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAACCGTCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCACAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

334

Amino Acids

36.9

Weight (kDa)

6.05

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 150	2.3e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	199 - 313	5.9e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	6 cut(s)	5, 111, 126, 201, 551, 951
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	778, 839
AcyI	GRCGYC	3 cut(s)	156, 176, 237
AfaI	GTAC	3 cut(s)	383, 919, 991
AfiI	CCNNNNNNNGG	2 cut(s)	46, 644
AgsI	TTSAA	6 cut(s)	34, 268, 573, 830, 845, 946
Alw21I	GWGCWC	2 cut(s)	282, 342
Alw26I	GTCTC	5 cut(s)	29, 93, 213, 290, 581
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	3 cut(s)	78, 308, 323
ApeKI	GCWGC	6 cut(s)	225, 529, 553, 656, 671, 784
ApoI	RAATTY	2 cut(s)	778, 839
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	499
AvaI	CYCGRG	3 cut(s)	78, 308, 323
AvaII	GGWCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	282, 342
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	3 cut(s)	174, 211, 797
Bbv12I	GWGCWC	2 cut(s)	282, 342
BbvI	GCAGC	6 cut(s)	212, 516, 565, 658, 668, 771
BccI	CCATC	7 cut(s)	113, 372, 430, 536, 638, 707, 853
BceAI	ACGGC	3 cut(s)	149, 169, 189
BclI	TGATCA	2 cut(s)	480, 616
BcoDI	GTCTC	5 cut(s)	29, 93, 213, 290, 581
BfaI	CTAG	2 cut(s)	746, 893
BfoI	RGCGCY	1 cut(s)	159
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	7 cut(s)	111, 226, 530, 554, 657, 672, 785
BlsI	GCNGC	7 cut(s)	112, 227, 531, 555, 658, 673, 786
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	3 cut(s)	78, 308, 323
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	157, 549
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	388, 696
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	3 cut(s)	174, 211, 797
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	898
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	3 cut(s)	156, 176, 237
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 644
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	875
Bse8I	GATNNNNATC	1 cut(s)	440
BseGI	GGATG	1 cut(s)	383
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	46, 644
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	6 cut(s)	104, 285, 416, 506, 624, 823
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	6 cut(s)	178, 181, 184, 187, 272, 996
BseXI	GCAGC	6 cut(s)	212, 516, 565, 658, 668, 771
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	282, 342
BsiHKCI	CYCGRG	3 cut(s)	78, 308, 323
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	46, 644
BsmAI	GTCTC	5 cut(s)	29, 93, 213, 290, 581
BsmBI	CGTCTC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	3 cut(s)	78, 308, 323
Bsp1286I	GDGCHC	2 cut(s)	282, 342
Bsp143I	GATC	4 cut(s)	261, 289, 480, 616
BspACI	CCGC	6 cut(s)	5, 111, 126, 201, 551, 951
BspCNI	CTCAG	6 cut(s)	103, 286, 415, 505, 623, 822
BspLI	GGNNCC	2 cut(s)	157, 549
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	389
BssMI	GATC	4 cut(s)	261, 289, 480, 616
BssNI	GRCGYC	3 cut(s)	156, 176, 237
Bst4CI	ACNGT	4 cut(s)	256, 592, 639, 695
Bst6I	CTCTTC	1 cut(s)	967
BstACI	GRCGYC	3 cut(s)	156, 176, 237
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	7 cut(s)	90, 294, 402, 492, 610, 788, 809
BstF5I	GGATG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	264, 292, 483, 619
BstMAI	GTCTC	5 cut(s)	29, 93, 213, 290, 581
BstMBI	GATC	4 cut(s)	261, 289, 480, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 234
BstNSI	RCATGY	1 cut(s)	536
BstV1I	GCAGC	6 cut(s)	212, 516, 565, 658, 668, 771
BstV2I	GAAGAC	3 cut(s)	174, 211, 797
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 700
Cac8I	GCNNGC	1 cut(s)	822
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	3 cut(s)	165, 217, 226
Csp6I	GTAC	3 cut(s)	382, 918, 990
CviAII	CATG	3 cut(s)	52, 533, 620
CviQI	GTAC	3 cut(s)	382, 918, 990
DdeI	CTNAG	7 cut(s)	90, 294, 402, 492, 610, 788, 809
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	4 cut(s)	263, 291, 482, 618
DpnII	GATC	4 cut(s)	261, 289, 480, 616
Eam1104I	CTCTTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	967
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	280, 340
Eco24I	GRGCYC	2 cut(s)	282, 342
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	2 cut(s)	280, 340
Eco88I	CYCGRG	3 cut(s)	78, 308, 323
EcoICRI	GAGCTC	2 cut(s)	280, 340
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	282, 342
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	55, 536, 623
FatI	CATG	3 cut(s)	51, 532, 619
FbaI	TGATCA	2 cut(s)	480, 616
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	7 cut(s)	111, 226, 530, 554, 657, 672, 785
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	2 cut(s)	282, 342
Fsp4HI	GCNGC	7 cut(s)	111, 226, 530, 554, 657, 672, 785
FspBI	CTAG	2 cut(s)	746, 893
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	7 cut(s)	111, 226, 530, 554, 657, 672, 785
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	3 cut(s)	165, 217, 226
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	3 cut(s)	156, 176, 237
Hin1II	CATG	3 cut(s)	55, 536, 623
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	58, 937
HindII	GTYRAC	2 cut(s)	58, 937
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	7 cut(s)	8, 81, 216, 298, 407, 687, 830
HpaII	CCGG	1 cut(s)	390
Hpy166II	GTNNAC	2 cut(s)	58, 937
Hpy188I	TCNGA	9 cut(s)	67, 93, 213, 397, 412, 495, 643, 812, 1004
Hpy188III	TCNNGA	7 cut(s)	78, 259, 293, 325, 404, 703, 845
Hpy8I	GTNNAC	2 cut(s)	58, 937
Hpy99I	CGWCG	3 cut(s)	170, 181, 260
HpyAV	CCTTC	2 cut(s)	490, 807
HpyCH4III	ACNGT	4 cut(s)	256, 592, 639, 695
HpyCH4IV	ACGT	3 cut(s)	29, 604, 988
HpyCH4V	TGCA	2 cut(s)	532, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 234
HpyF3I	CTNAG	7 cut(s)	90, 294, 402, 492, 610, 788, 809
HpySE526I	ACGT	3 cut(s)	29, 604, 988
Hsp92I	GRCGYC	3 cut(s)	156, 176, 237
Hsp92II	CATG	3 cut(s)	55, 536, 623
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	480, 616
Kzo9I	GATC	4 cut(s)	261, 289, 480, 616
LmnI	GCTCC	2 cut(s)	42, 285
Lsp1109I	GCAGC	6 cut(s)	212, 516, 565, 658, 668, 771
LweI	GCATC	2 cut(s)	388, 696
MaeI	CTAG	2 cut(s)	746, 893
MaeII	ACGT	3 cut(s)	29, 604, 988
MalI	GATC	4 cut(s)	263, 291, 482, 618
MboI	GATC	4 cut(s)	261, 289, 480, 616
MboII	GAAGA	8 cut(s)	174, 211, 256, 340, 734, 797, 984, 991
MfeI	CAATTG	2 cut(s)	582, 665
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	282, 342
MluCI	AATT	6 cut(s)	558, 582, 665, 720, 778, 839
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	4 cut(s)	17, 90, 225, 292
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	1 cut(s)	390
MunI	CAATTG	2 cut(s)	582, 665
MwoI	GCNNNNNNNGC	2 cut(s)	119, 234
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	4 cut(s)	261, 289, 480, 616
NlaIII	CATG	3 cut(s)	55, 536, 623
NlaIV	GGNNCC	2 cut(s)	157, 549
NspI	RCATGY	1 cut(s)	536
PaeR7I	CTCGAG	2 cut(s)	308, 323
PcsI	WCGNNNNNNNCGW	1 cut(s)	933
PfeI	GAWTC	3 cut(s)	407, 687, 830
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	7 cut(s)	112, 227, 531, 555, 658, 673, 786
PleI	GAGTC	4 cut(s)	16, 89, 224, 292
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	4 cut(s)	16, 89, 224, 292
PpuMI	RGGWCCY	1 cut(s)	499
Psp124BI	GAGCTC	2 cut(s)	282, 342
Psp5II	RGGWCCY	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	157, 549
PspPI	GGNCC	1 cut(s)	499
PspPPI	RGGWCCY	1 cut(s)	499
PspXI	VCTCGAGB	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	3 cut(s)	383, 919, 991
RsaNI	GTAC	3 cut(s)	382, 918, 990
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	2 cut(s)	282, 342
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	7 cut(s)	111, 226, 530, 554, 657, 672, 785
Sau3AI	GATC	4 cut(s)	261, 289, 480, 616
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	4 cut(s)	17, 90, 225, 292
SduI	GDGCHC	2 cut(s)	282, 342
SfaNI	GCATC	2 cut(s)	388, 696
SfoI	GGCGCC	1 cut(s)	157
Sfr274I	CTCGAG	2 cut(s)	308, 323
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	2 cut(s)	308, 323
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	3 cut(s)	308, 323, 913
SmoI	CTYRAG	3 cut(s)	308, 323, 913
Sse9I	AATT	6 cut(s)	558, 582, 665, 720, 778, 839
SsiI	CCGC	6 cut(s)	5, 111, 126, 201, 551, 951
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	746, 893
SstI	GAGCTC	2 cut(s)	282, 342
TaaI	ACNGT	4 cut(s)	256, 592, 639, 695
TaiI	ACGT	3 cut(s)	32, 607, 991
TaqI	TCGA	7 cut(s)	14, 168, 258, 276, 309, 324, 936
TasI	AATT	6 cut(s)	558, 582, 665, 720, 778, 839
TatI	WGTACW	1 cut(s)	917
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	407, 687, 830
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	2 cut(s)	25, 700
TseI	GCWGC	6 cut(s)	225, 529, 553, 656, 671, 784
TspDTI	ATGAA	4 cut(s)	110, 462, 722, 938
TspRI	CASTG	2 cut(s)	25, 700
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	778, 839
XceI	RCATGY	1 cut(s)	536
XhoI	CTCGAG	2 cut(s)	308, 323
XmiI	GTMKAC	1 cut(s)	936
XspI	CTAG	2 cut(s)	746, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.