Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

82063036 .. 82068670

Gene Structure 5635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGATGGATGCCGGTCTGAACTATTGTTGTTAGTATTCACCATTCTGCGACGGATTACAGCAAAGATGGTGCCAAAGCACTGCACTGTTGATCAATTCAGTGGAGAAAGCACACCCGTGATACTTCCTGTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATAACTCCTTCTGTGGGATACACAAGTGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTATCTCATGTAAATGAGCCTTTGATATTCGAGACGGTGGAAGCTGAATGTATCTCAGTTGATCATGTTGCGCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTATTTGACAAATTTATAAACTATCGGTTGTGTGCACTGGCTGCTCATCTTACAGGAATGCACAGTGCCATCAAGATGCTCAATAGCAGAGTTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAGAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACACTGACACATTGCTGATTACATATCTCGCTGTGCTTACTAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGTTTATGACAGGCATAGCGGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

256

Amino Acids

28.38

Weight (kDa)

6.75

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	32 - 104	3.3e-10	FKBP-type peptidyl-prolyl cis-trans isomerase
MitMem_reg	PF13012	108 - 234	1.5e-26	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	149, 410
Acc16I	TGCGCA	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	732
AcsI	RAATTY	3 cut(s)	404, 541, 602
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	682, 754
AfiI	CCNNNNNNNGG	2 cut(s)	221, 371
AgsI	TTSAA	3 cut(s)	593, 608, 709
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	240, 326, 512, 694
AluI	AGCT	4 cut(s)	240, 326, 512, 694
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	308
Alw44I	GTGCAC	1 cut(s)	426
AoxI	GGCC	1 cut(s)	265
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	276, 383, 434, 547
ApoI	RAATTY	3 cut(s)	404, 541, 602
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	430
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BanI	GGYRCC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	288, 395, 421, 534
BccI	CCATC	5 cut(s)	61, 365, 373, 470, 616
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	2 cut(s)	91, 343
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	277, 384, 435, 548
BlsI	GCNGC	4 cut(s)	278, 385, 436, 549
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	364, 459
BpiI	GAAGAC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 371
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	638
BseGI	GGATG	2 cut(s)	10, 14
BseLI	CCNNNNNNNGG	2 cut(s)	221, 371
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	351, 586
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	3 cut(s)	176, 211, 759
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	4 cut(s)	288, 395, 421, 534
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	221, 371
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	91, 343
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	350, 585
BspLI	GGNNCC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	12
BssMI	GATC	2 cut(s)	91, 343
Bst4CI	ACNGT	4 cut(s)	88, 319, 458, 715
Bst6I	CTCTTC	2 cut(s)	252, 730
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	3 cut(s)	337, 551, 572
BstF5I	GGATG	2 cut(s)	10, 14
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	94, 346
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	91, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 434
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	4 cut(s)	288, 395, 421, 534
BstV2I	GAAGAC	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	10, 14
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	6 cut(s)	79, 84, 106, 428, 463, 630
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	681, 753
CviAII	CATG	3 cut(s)	178, 290, 347
CviJI	RGCY	9 cut(s)	156, 240, 267, 279, 301, 326, 434, 512, 694
CviKI_1	RGCY	9 cut(s)	156, 240, 267, 279, 301, 326, 434, 512, 694
CviQI	GTAC	2 cut(s)	681, 753
DdeI	CTNAG	3 cut(s)	337, 551, 572
DpnI	GATC	2 cut(s)	93, 345
DpnII	GATC	2 cut(s)	91, 343
Eam1104I	CTCTTC	2 cut(s)	252, 730
EarI	CTCTTC	2 cut(s)	252, 730
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	541
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	3 cut(s)	181, 293, 350
FaiI	YATR	9 cut(s)	149, 179, 291, 348, 410, 515, 652, 720, 729
FatI	CATG	3 cut(s)	177, 289, 346
FbaI	TGATCA	2 cut(s)	91, 343
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	4 cut(s)	277, 384, 435, 548
FokI	GGATG	2 cut(s)	17, 21
Fsp4HI	GCNGC	4 cut(s)	277, 384, 435, 548
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	277, 384, 435, 548
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	181, 293, 350
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	2 cut(s)	183, 593
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	133, 428, 700
Hpy188I	TCNGA	6 cut(s)	19, 144, 188, 370, 575, 767
Hpy188III	TCNNGA	4 cut(s)	254, 313, 466, 608
Hpy8I	GTNNAC	3 cut(s)	133, 428, 700
Hpy99I	CGWCG	2 cut(s)	54, 276
HpyAV	CCTTC	2 cut(s)	225, 570
HpyCH4III	ACNGT	4 cut(s)	88, 319, 458, 715
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	4 cut(s)	84, 428, 454, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 434
HpyF3I	CTNAG	3 cut(s)	337, 551, 572
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	3 cut(s)	181, 293, 350
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	2 cut(s)	91, 343
Kzo9I	GATC	2 cut(s)	91, 343
LpnPI	CCDG	9 cut(s)	26, 141, 155, 267, 416, 432, 597, 680, 709
Lsp1109I	GCAGC	4 cut(s)	288, 395, 421, 534
LweI	GCATC	2 cut(s)	364, 459
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	751
MalI	GATC	2 cut(s)	93, 345
MboI	GATC	2 cut(s)	91, 343
MboII	GAAGA	5 cut(s)	269, 497, 560, 747, 754
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	95, 249, 392, 404, 541, 602
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	3 cut(s)	116, 294, 467
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	273, 434
NdeII	GATC	2 cut(s)	91, 343
NlaIII	CATG	3 cut(s)	181, 293, 350
NlaIV	GGNNCC	1 cut(s)	72
NsbI	TGCGCA	1 cut(s)	354
OliI	CACNNNNGTG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	183, 593
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	278, 385, 436, 549
PsiI	TTATAA	2 cut(s)	149, 410
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	682, 754
RsaNI	GTAC	2 cut(s)	681, 753
RseI	CAYNNNNRTG	3 cut(s)	116, 294, 467
SalI	GTCGAC	1 cut(s)	698
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	277, 384, 435, 548
Sau3AI	GATC	2 cut(s)	91, 343
Sau96I	GGNCC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	364, 459
SmiMI	CAYNNNNRTG	3 cut(s)	116, 294, 467
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	6 cut(s)	95, 249, 392, 404, 541, 602
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	509
TaaI	ACNGT	4 cut(s)	88, 319, 458, 715
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	3 cut(s)	271, 312, 699
TasI	AATT	6 cut(s)	95, 249, 392, 404, 541, 602
TatI	WGTACW	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	183, 593
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	6 cut(s)	86, 91, 106, 435, 463, 637
TseI	GCWGC	4 cut(s)	276, 383, 434, 547
TspDTI	ATGAA	2 cut(s)	485, 701
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	6 cut(s)	86, 91, 106, 435, 463, 637
Van91I	CCANNNNNTGG	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	3 cut(s)	404, 541, 602
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.