Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2774014 .. 2778206

Gene Structure 4193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G036800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCAGAGTCGTCGAGCAGCGGGCTGACGTTCAAGCTTCACCCTCTGGTGATCGTGAACATATCGGATCACTATTCTAGGGTTAAGTCTCAGATGCATCCGCCCATCACCAACACAGCGACAACAACAACAACGCCACCACCCAACAATGGCGCCGAAGGAGCAGTAGAAACAGCGCCTTCTTCTTCTTCTTCCTCTGCCTTGGCCTCGTCTCCGAGGGTCTTCGGCTGCGTTATTGGGGTTCAGAGGGGCCGCACAGTCGAGATCTTTAATAGCTTCGAGCTCCTTTATGATCCTGCAACTCACTCCCTCGACCGCGCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCGCACTTTTACATACTGGGATGGTACTCTACGGGTACTGATGCTCAGGAATCTGATATGAACATCCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTCCTCAACCCTTTGATCAACCCTGCCCAAAAGGATCTCCCAATCACTATTTACGAAAGTGAGCTGCATGTCATCGATGGGATTCCACAGCTGATTTTTGTCAGTTCAAGTTACACGATTGAGACGGTAGAAGCTGAACGTATCTCAGTGGATCATGTCGCTCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATTCACAGTGCCATCAAGATGCTAAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGTGATATACCTTGTGAGAATTCTCTGCTAAGGCAAGTATCAAGTCTTCTGAGGAGGTTGCCTGCCATTGAATCGGGGAAATTTCAAGATGATTTCTTGATGGAATACAATGACACATTATTGATTACATCTTTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTAGTCGACAAGTTCAACACTGCATATGACAGGCATACTCGAAGGGGTGGACGGACCACTTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

334

Amino Acids

36.85

Weight (kDa)

6.15

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	939
AccII	CGCG	1 cut(s)	318
AciI	CCGC	5 cut(s)	21, 101, 253, 316, 362
AclWI	GGATC	4 cut(s)	75, 287, 510, 627
AcsI	RAATTY	3 cut(s)	690, 781, 842
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	386, 397, 922
AfiI	CCNNNNNNNGG	2 cut(s)	149, 647
AgsI	TTSAA	5 cut(s)	34, 576, 833, 848, 949
Alw21I	GWGCWC	2 cut(s)	285, 345
Alw26I	GTCTC	3 cut(s)	93, 216, 584
AlwI	GGATC	4 cut(s)	75, 287, 510, 627
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	204, 250
ApeKI	GCWGC	5 cut(s)	18, 228, 532, 659, 674
ApoI	RAATTY	3 cut(s)	690, 781, 842
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	3 cut(s)	155, 178, 320
AspS9I	GGNCC	2 cut(s)	250, 987
AsuHPI	GGTGA	4 cut(s)	32, 61, 100, 776
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	987
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	285, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	792, 824
BbsI	GAAGAC	2 cut(s)	214, 800
Bbv12I	GWGCWC	2 cut(s)	285, 345
BbvI	GCAGC	5 cut(s)	30, 215, 519, 661, 671
BccI	CCATC	8 cut(s)	113, 375, 433, 539, 641, 649, 710, 856
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	3 cut(s)	93, 216, 584
BfaI	CTAG	3 cut(s)	78, 749, 935
BfoI	RGCGCY	2 cut(s)	156, 179
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	6 cut(s)	19, 229, 253, 533, 660, 675
BlsI	GCNGC	6 cut(s)	20, 230, 254, 534, 661, 676
Bme18I	GGWCC	1 cut(s)	987
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	250, 987
BmiI	GGNNCC	2 cut(s)	154, 251
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	4 cut(s)	84, 106, 391, 699
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	214, 800
Bpu10I	CCTNAGC	2 cut(s)	405, 791
BpuEI	CTTGAG	1 cut(s)	901
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	201, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 647
Bse1I	ACTGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	201, 215
BseGI	GGATG	3 cut(s)	97, 386, 423
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	149, 647
BseMII	CTCAG	4 cut(s)	104, 419, 627, 803
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	2 cut(s)	461, 829
BseXI	GCAGC	5 cut(s)	30, 215, 519, 661, 671
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	206, 252
BshNI	GGYRCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	285, 345
BsiHKCI	CYCGRG	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	149, 647
BsmAI	GTCTC	3 cut(s)	93, 216, 584
BsmBI	CGTCTC	2 cut(s)	216, 584
BsnI	GGCC	2 cut(s)	206, 252
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	285, 345
Bsp143I	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
BspACI	CCGC	5 cut(s)	21, 101, 253, 316, 362
BspANI	GGCC	2 cut(s)	206, 252
BspCNI	CTCAG	4 cut(s)	103, 418, 626, 804
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	154, 251
BspPI	GGATC	4 cut(s)	75, 287, 510, 627
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	201, 215
BssMI	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	259, 595, 698
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	23, 825
BstDEI	CTNAG	5 cut(s)	90, 405, 613, 791, 812
BstF5I	GGATG	3 cut(s)	97, 386, 423
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	2 cut(s)	156, 179
BstHHI	GCGC	3 cut(s)	155, 178, 320
BstKTI	GATC	7 cut(s)	54, 70, 267, 295, 486, 505, 622
BstMAI	GTCTC	3 cut(s)	93, 216, 584
BstMBI	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	539
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	5 cut(s)	30, 215, 519, 661, 671
BstV2I	GAAGAC	2 cut(s)	214, 800
BstX2I	RGATCY	2 cut(s)	264, 502
BstYI	RGATCY	2 cut(s)	264, 502
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	206, 252
BsuTUI	ATCGAT	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	97, 386, 423
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	3 cut(s)	621, 703, 951
Cac8I	GCNNGC	2 cut(s)	23, 825
CfoI	GCGC	3 cut(s)	155, 178, 320
Cfr13I	GGNCC	2 cut(s)	250, 987
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	3 cut(s)	385, 396, 921
CviAII	CATG	2 cut(s)	536, 623
CviQI	GTAC	3 cut(s)	385, 396, 921
DdeI	CTNAG	5 cut(s)	90, 405, 613, 791, 812
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	7 cut(s)	53, 69, 266, 294, 485, 504, 621
DpnII	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	2 cut(s)	283, 343
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	285, 345
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	987
Eco53kI	GAGCTC	2 cut(s)	283, 343
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	2 cut(s)	283, 343
EcoRI	GAATTC	2 cut(s)	690, 781
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	285, 345
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	2 cut(s)	216, 584
FaeI	CATG	2 cut(s)	539, 626
FatI	CATG	2 cut(s)	535, 622
FauI	CCCGC	2 cut(s)	14, 369
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	6 cut(s)	19, 229, 253, 533, 660, 675
FokI	GGATG	3 cut(s)	84, 393, 410
FriOI	GRGCYC	2 cut(s)	285, 345
Fsp4HI	GCNGC	6 cut(s)	19, 229, 253, 533, 660, 675
FspBI	CTAG	3 cut(s)	78, 749, 935
GlaI	GCGC	3 cut(s)	154, 177, 319
GluI	GCNGC	6 cut(s)	19, 229, 253, 533, 660, 675
HaeII	RGCGCY	2 cut(s)	156, 179
HaeIII	GGCC	2 cut(s)	206, 252
HhaI	GCGC	3 cut(s)	155, 178, 320
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	539, 626
Hin6I	GCGC	3 cut(s)	153, 176, 318
HinP1I	GCGC	3 cut(s)	153, 176, 318
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	2 cut(s)	35, 432
HinfI	GANTC	4 cut(s)	8, 410, 550, 833
HphI	GGTGA	4 cut(s)	32, 61, 100, 776
Hpy166II	GTNNAC	3 cut(s)	58, 940, 983
Hpy188I	TCNGA	8 cut(s)	67, 93, 216, 246, 415, 646, 813, 1001
Hpy188III	TCNNGA	7 cut(s)	55, 262, 328, 407, 706, 848, 859
Hpy8I	GTNNAC	3 cut(s)	58, 940, 983
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	152, 189, 331, 346, 969
HpyCH4III	ACNGT	3 cut(s)	259, 595, 698
HpyCH4IV	ACGT	2 cut(s)	29, 607
HpyCH4V	TGCA	5 cut(s)	97, 299, 535, 757, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	5 cut(s)	90, 405, 613, 791, 812
HpySE526I	ACGT	2 cut(s)	29, 607
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	539, 626
HspAI	GCGC	3 cut(s)	153, 176, 318
KasI	GGCGCC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
LmnI	GCTCC	2 cut(s)	161, 288
LpnPI	CCDG	9 cut(s)	32, 309, 362, 392, 471, 504, 672, 837, 949
Lsp1109I	GCAGC	5 cut(s)	30, 215, 519, 661, 671
LweI	GCATC	4 cut(s)	84, 106, 391, 699
MaeI	CTAG	3 cut(s)	78, 749, 935
MaeII	ACGT	2 cut(s)	29, 607
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	7 cut(s)	53, 69, 266, 294, 485, 504, 621
MboI	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
MboII	GAAGA	8 cut(s)	174, 177, 180, 183, 214, 343, 737, 800
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	2 cut(s)	264, 502
MhlI	GDGCHC	2 cut(s)	285, 345
MluCI	AATT	5 cut(s)	668, 690, 723, 781, 842
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	17
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	3 cut(s)	84, 270, 636
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	2 cut(s)	21, 559
MunI	CAATTG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	161
NarI	GGCGCC	1 cut(s)	153
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
NlaIII	CATG	2 cut(s)	539, 626
NlaIV	GGNNCC	2 cut(s)	154, 251
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	3 cut(s)	410, 550, 833
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	6 cut(s)	20, 230, 254, 534, 661, 676
PleI	GAGTC	1 cut(s)	16
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	16
Psp124BI	GAGCTC	2 cut(s)	285, 345
PspN4I	GGNNCC	2 cut(s)	154, 251
PspPI	GGNCC	2 cut(s)	250, 987
PsuI	RGATCY	2 cut(s)	264, 502
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	386, 397, 922
RsaNI	GTAC	3 cut(s)	385, 396, 921
RseI	CAYNNNNRTG	1 cut(s)	707
SacI	GAGCTC	2 cut(s)	285, 345
SalI	GTCGAC	1 cut(s)	938
SaqAI	TTAA	3 cut(s)	84, 270, 636
SatI	GCNGC	6 cut(s)	19, 229, 253, 533, 660, 675
Sau3AI	GATC	7 cut(s)	51, 67, 264, 292, 483, 502, 619
Sau96I	GGNCC	2 cut(s)	250, 987
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	285, 345
SfaNI	GCATC	4 cut(s)	84, 106, 391, 699
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	2 cut(s)	326, 916
SmoI	CTYRAG	2 cut(s)	326, 916
Sse9I	AATT	5 cut(s)	668, 690, 723, 781, 842
SsiI	CCGC	5 cut(s)	21, 101, 253, 316, 362
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	78, 749, 935
SstI	GAGCTC	2 cut(s)	285, 345
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	259, 595, 698
TaiI	ACGT	2 cut(s)	32, 610
TaqI	TCGA	8 cut(s)	14, 261, 279, 312, 327, 543, 939, 973
TasI	AATT	5 cut(s)	668, 690, 723, 781, 842
TatI	WGTACW	1 cut(s)	920
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	410, 550, 833
Tru1I	TTAA	3 cut(s)	84, 270, 636
Tru9I	TTAA	3 cut(s)	84, 270, 636
TscAI	CASTG	3 cut(s)	621, 703, 958
TseI	GCWGC	5 cut(s)	18, 228, 532, 659, 674
TspDTI	ATGAA	4 cut(s)	434, 465, 725, 941
TspGWI	ACGGA	1 cut(s)	1000
TspRI	CASTG	3 cut(s)	621, 703, 958
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	987
XapI	RAATTY	3 cut(s)	690, 781, 842
XceI	RCATGY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	939
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	3 cut(s)	78, 749, 935
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.