Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

23461681 .. 23462643

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTGAGTCATCGAGCAGTGGTCTCACGTTCAAGCTCCACCCTCTGGTCATGGTCAACATCTCCGTCCACTACTCCAGGGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACTACGCCACCGCAACAACCAACAAACACGGCTCCGAAGCCGTCGAAGACGAGCATCTTGTTCTCGCACGACATAGGGACGTCGGTGCTGTTCAAGGTGCTATCGGCGTTCACCGCACCGGAATCTTCCGATCAGACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

85

Amino Acids

9.28

Weight (kDa)

8.26

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	46
AciI	CCGC	3 cut(s)	111, 126, 229
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	34, 209
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	29, 93
AsuHPI	GGTGA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	140, 160
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	29, 93
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	29, 93
BsmFI	GGGAC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	3 cut(s)	111, 126, 229
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	6, 90
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	29, 93
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 228
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	5, 37, 147, 155
CviKI_1	RGCY	4 cut(s)	5, 37, 147, 155
DdeI	CTNAG	2 cut(s)	6, 90
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	55
FaiI	YATR	2 cut(s)	53, 189
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	61
HapII	CCGG	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	8, 237
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	58, 70, 226
Hpy188I	TCNGA	4 cut(s)	93, 151, 245, 250
Hpy8I	GTNNAC	3 cut(s)	58, 70, 226
Hpy99I	CGWCG	2 cut(s)	161, 200
HpyCH4IV	ACGT	2 cut(s)	29, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 228
HpyF3I	CTNAG	2 cut(s)	6, 90
HpySE526I	ACGT	2 cut(s)	29, 195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	42, 152
LpnPI	CCDG	5 cut(s)	32, 64, 91, 238, 247
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	2 cut(s)	29, 195
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	173, 232
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	54, 111
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	119, 228
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	4 cut(s)	32, 39, 198, 214
SfaNI	GCATC	1 cut(s)	178
SsiI	CCGC	3 cut(s)	111, 126, 229
StyD4I	CCNGG	1 cut(s)	77
TaiI	ACGT	2 cut(s)	32, 198
TaqI	TCGA	2 cut(s)	14, 159
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	237
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	46
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.