Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

80199906 .. 80202999

Gene Structure 3094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACCATTCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTACTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTCCCAATCACTATTTACGAAAGTGAGCTGCATGTCATTGATGGGGTTCCGCAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGACAGTAGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAGCCGTCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCTATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCACAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

196

Amino Acids

21.82

Weight (kDa)

6.12

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	61 - 175	1.6e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	2 cut(s)	137, 537
AcsI	RAATTY	2 cut(s)	364, 425
AfaI	GTAC	2 cut(s)	505, 577
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	159, 416, 431, 532
AluBI	AGCT	8 cut(s)	17, 115, 142, 162, 185, 335, 482, 517
AluI	AGCT	8 cut(s)	17, 115, 142, 162, 185, 335, 482, 517
Alw26I	GTCTC	1 cut(s)	167
ApeKI	GCWGC	5 cut(s)	115, 139, 242, 257, 370
ApoI	RAATTY	2 cut(s)	364, 425
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	5 cut(s)	102, 151, 244, 254, 357
BccI	CCATC	4 cut(s)	16, 122, 224, 439
BceAI	ACGGC	1 cut(s)	208
BclI	TGATCA	2 cut(s)	66, 202
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	332, 479
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	5 cut(s)	116, 140, 243, 258, 371
BlsI	GCNGC	5 cut(s)	117, 141, 244, 259, 372
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	3 cut(s)	92, 210, 409
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	5 cut(s)	102, 151, 244, 254, 357
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	66, 202
BspACI	CCGC	2 cut(s)	137, 537
BspCNI	CTCAG	3 cut(s)	91, 209, 408
BspLI	GGNNCC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	461
BssMI	GATC	2 cut(s)	66, 202
Bst4CI	ACNGT	2 cut(s)	178, 281
Bst6I	CTCTTC	1 cut(s)	553
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	78, 196, 374, 395
BstKTI	GATC	2 cut(s)	69, 205
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	66, 202
BstNSI	RCATGY	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	102, 151, 244, 254, 357
BstV2I	GAAGAC	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	504, 576
CviAII	CATG	2 cut(s)	119, 206
CviQI	GTAC	2 cut(s)	504, 576
DdeI	CTNAG	4 cut(s)	78, 196, 374, 395
DpnI	GATC	2 cut(s)	68, 204
DpnII	GATC	2 cut(s)	66, 202
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	2 cut(s)	122, 209
FaiI	YATR	6 cut(s)	48, 120, 207, 338, 475, 543
FatI	CATG	2 cut(s)	118, 205
FbaI	TGATCA	2 cut(s)	66, 202
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	5 cut(s)	116, 140, 243, 258, 371
Fsp4HI	GCNGC	5 cut(s)	116, 140, 243, 258, 371
FspBI	CTAG	2 cut(s)	332, 479
GluI	GCNGC	5 cut(s)	116, 140, 243, 258, 371
Hin1II	CATG	2 cut(s)	122, 209
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	273, 416
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	81, 229, 398, 590
Hpy188III	TCNNGA	2 cut(s)	289, 431
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	76, 393
HpyCH4III	ACNGT	2 cut(s)	178, 281
HpyCH4IV	ACGT	2 cut(s)	190, 574
HpyCH4V	TGCA	2 cut(s)	118, 340
HpyF3I	CTNAG	4 cut(s)	78, 196, 374, 395
HpySE526I	ACGT	2 cut(s)	190, 574
Hsp92II	CATG	2 cut(s)	122, 209
Ksp22I	TGATCA	2 cut(s)	66, 202
Kzo9I	GATC	2 cut(s)	66, 202
LpnPI	CCDG	7 cut(s)	54, 75, 87, 255, 420, 503, 532
Lsp1109I	GCAGC	5 cut(s)	102, 151, 244, 254, 357
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	332, 479
MaeII	ACGT	2 cut(s)	190, 574
MalI	GATC	2 cut(s)	68, 204
MboI	GATC	2 cut(s)	66, 202
MboII	GAAGA	4 cut(s)	320, 383, 570, 577
MfeI	CAATTG	2 cut(s)	168, 251
MluCI	AATT	6 cut(s)	144, 168, 251, 306, 364, 425
MnlI	CCTC	5 cut(s)	98, 227, 554, 560, 563
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	168, 251
NdeII	GATC	2 cut(s)	66, 202
NlaIII	CATG	2 cut(s)	122, 209
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	273, 416
PkrI	GCNGC	5 cut(s)	117, 141, 244, 259, 372
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
RsaI	GTAC	2 cut(s)	505, 577
RsaNI	GTAC	2 cut(s)	504, 576
SalI	GTCGAC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	5 cut(s)	116, 140, 243, 258, 371
Sau3AI	GATC	2 cut(s)	66, 202
Sau96I	GGNCC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	218, 499
SmoI	CTYRAG	2 cut(s)	218, 499
Sse9I	AATT	6 cut(s)	144, 168, 251, 306, 364, 425
SsiI	CCGC	2 cut(s)	137, 537
SspMI	CTAG	2 cut(s)	332, 479
TaaI	ACNGT	2 cut(s)	178, 281
TaiI	ACGT	2 cut(s)	193, 577
TaqI	TCGA	1 cut(s)	522
TasI	AATT	6 cut(s)	144, 168, 251, 306, 364, 425
TatI	WGTACW	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	273, 416
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	5 cut(s)	115, 139, 242, 257, 370
TspDTI	ATGAA	3 cut(s)	48, 308, 524
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	364, 425
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	332, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.