Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

83170481 .. 83173854

Gene Structure 3374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG487400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAACACTGTTACGAGCAAAAAAAGAAGCAGAGAGCTTGGAAAACCAGAAAGGCGAAAAAGCGAGAGAGAAAGAAAGAGAGAGAGAGAGAAAGCCCGAAACCCCCAAATCGGAGAAGAATGGCGGAGTCGTCGAGCAGTGGTCTCACGTTCAAGCTCCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCCGAGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCAACAACCACCACCACCTCCACCAACAACGGCGCCGAAGCCGTCGAAACGGCGTCGTCTTCCTCTTCCTCCTCCGCTTCGTCTCCTAGAGTCTTCGGCTGCGTCATCGGCGTCCAGCGTGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAACAAGAGCTCTATAAAAAGGTTTTCCCCCATTTTTACATACTGGGATGGTACTCTACCGGCTCTGATGCTCAGGAATCTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTACTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTCCCAATCACTATTTACGAAAGTGAGCTGCATGTCATTGATGGGGTTCCACAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGACAGTAGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAACCTTCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCACAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

374

Amino Acids

42.06

Weight (kDa)

8.97

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	47 - 190	3e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	239 - 353	7.4e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	1056
AciI	CCGC	5 cut(s)	125, 231, 246, 321, 1071
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	898, 959
AcyI	GRCGYC	3 cut(s)	279, 299, 357
AfaI	GTAC	3 cut(s)	503, 1039, 1111
AfiI	CCNNNNNNNGG	3 cut(s)	111, 166, 764
AgsI	TTSAA	6 cut(s)	154, 388, 693, 950, 965, 1066
Alw21I	GWGCWC	2 cut(s)	402, 462
Alw26I	GTCTC	5 cut(s)	149, 213, 333, 410, 701
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	3 cut(s)	198, 428, 443
ApeKI	GCWGC	5 cut(s)	345, 649, 776, 791, 904
ApoI	RAATTY	2 cut(s)	898, 959
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	619
AvaI	CYCGRG	3 cut(s)	198, 428, 443
AvaII	GGWCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	402, 462
BarI	GAAGNNNNNNTAC	2 cut(s)	909, 941
BbsI	GAAGAC	3 cut(s)	297, 331, 917
Bbv12I	GWGCWC	2 cut(s)	402, 462
BbvI	GCAGC	5 cut(s)	332, 636, 778, 788, 891
BccI	CCATC	7 cut(s)	233, 492, 550, 656, 758, 827, 973
BceAI	ACGGC	3 cut(s)	272, 292, 312
BclI	TGATCA	2 cut(s)	600, 736
BcoDI	GTCTC	5 cut(s)	149, 213, 333, 410, 701
BfaI	CTAG	3 cut(s)	333, 866, 1013
BfoI	RGCGCY	1 cut(s)	282
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	6 cut(s)	231, 346, 650, 777, 792, 905
BlsI	GCNGC	6 cut(s)	232, 347, 651, 778, 793, 906
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	3 cut(s)	198, 428, 443
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	280, 669
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	508, 816
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	3 cut(s)	297, 331, 917
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	1018
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	3 cut(s)	279, 299, 357
BsaI	GGTCTC	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 166, 764
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	995
Bse8I	GATNNNNATC	1 cut(s)	560
BseGI	GGATG	1 cut(s)	503
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	111, 166, 764
BseMI	GCAATG	1 cut(s)	995
BseMII	CTCAG	6 cut(s)	224, 405, 536, 626, 744, 943
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	3 cut(s)	307, 392, 1116
BseXI	GCAGC	5 cut(s)	332, 636, 778, 788, 891
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	402, 462
BsiHKCI	CYCGRG	3 cut(s)	198, 428, 443
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	3 cut(s)	111, 166, 764
BsmAI	GTCTC	5 cut(s)	149, 213, 333, 410, 701
BsmBI	CGTCTC	1 cut(s)	333
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	3 cut(s)	198, 428, 443
Bsp1286I	GDGCHC	2 cut(s)	402, 462
Bsp143I	GATC	4 cut(s)	381, 409, 600, 736
BspACI	CCGC	5 cut(s)	125, 231, 246, 321, 1071
BspCNI	CTCAG	6 cut(s)	223, 406, 535, 625, 743, 942
BspLI	GGNNCC	2 cut(s)	280, 669
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	509
BssMI	GATC	4 cut(s)	381, 409, 600, 736
BssNI	GRCGYC	3 cut(s)	279, 299, 357
Bst4CI	ACNGT	4 cut(s)	11, 376, 712, 815
Bst6I	CTCTTC	2 cut(s)	316, 1087
BstACI	GRCGYC	3 cut(s)	279, 299, 357
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	7 cut(s)	210, 414, 522, 612, 730, 908, 929
BstF5I	GGATG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	4 cut(s)	384, 412, 603, 739
BstMAI	GTCTC	5 cut(s)	149, 213, 333, 410, 701
BstMBI	GATC	4 cut(s)	381, 409, 600, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 354
BstNSI	RCATGY	1 cut(s)	656
BstV1I	GCAGC	5 cut(s)	332, 636, 778, 788, 891
BstV2I	GAAGAC	3 cut(s)	297, 331, 917
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	7, 145, 820
Cac8I	GCNNGC	1 cut(s)	942
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	3 cut(s)	288, 337, 346
Csp6I	GTAC	3 cut(s)	502, 1038, 1110
CviAII	CATG	3 cut(s)	172, 653, 740
CviQI	GTAC	3 cut(s)	502, 1038, 1110
DdeI	CTNAG	7 cut(s)	210, 414, 522, 612, 730, 908, 929
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	4 cut(s)	383, 411, 602, 738
DpnII	GATC	4 cut(s)	381, 409, 600, 736
Eam1104I	CTCTTC	2 cut(s)	316, 1087
EarI	CTCTTC	2 cut(s)	316, 1087
EciI	GGCGGA	1 cut(s)	140
Ecl136II	GAGCTC	2 cut(s)	400, 460
Eco24I	GRGCYC	2 cut(s)	402, 462
Eco31I	GGTCTC	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	619
Eco53kI	GAGCTC	2 cut(s)	400, 460
Eco88I	CYCGRG	3 cut(s)	198, 428, 443
EcoICRI	GAGCTC	2 cut(s)	400, 460
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	562
EcoT38I	GRGCYC	2 cut(s)	402, 462
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	3 cut(s)	175, 656, 743
FatI	CATG	3 cut(s)	171, 652, 739
FbaI	TGATCA	2 cut(s)	600, 736
FblI	GTMKAC	1 cut(s)	1056
Fnu4HI	GCNGC	6 cut(s)	231, 346, 650, 777, 792, 905
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	2 cut(s)	402, 462
Fsp4HI	GCNGC	6 cut(s)	231, 346, 650, 777, 792, 905
FspBI	CTAG	3 cut(s)	333, 866, 1013
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	6 cut(s)	231, 346, 650, 777, 792, 905
HaeII	RGCGCY	1 cut(s)	282
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	3 cut(s)	288, 337, 346
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	3 cut(s)	279, 299, 357
Hin1II	CATG	3 cut(s)	175, 656, 743
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	2 cut(s)	178, 1057
HindII	GTYRAC	2 cut(s)	178, 1057
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	7 cut(s)	128, 201, 336, 418, 527, 807, 950
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	2 cut(s)	178, 1057
Hpy188I	TCNGA	9 cut(s)	114, 187, 213, 517, 532, 615, 763, 932, 1124
Hpy188III	TCNNGA	7 cut(s)	198, 379, 413, 445, 524, 823, 965
Hpy8I	GTNNAC	2 cut(s)	178, 1057
Hpy99I	CGWCG	4 cut(s)	136, 293, 304, 380
HpyAV	CCTTC	3 cut(s)	610, 768, 927
HpyCH4III	ACNGT	4 cut(s)	11, 376, 712, 815
HpyCH4IV	ACGT	3 cut(s)	149, 724, 1108
HpyCH4V	TGCA	2 cut(s)	652, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 354
HpyF3I	CTNAG	7 cut(s)	210, 414, 522, 612, 730, 908, 929
HpySE526I	ACGT	3 cut(s)	149, 724, 1108
Hsp92I	GRCGYC	3 cut(s)	279, 299, 357
Hsp92II	CATG	3 cut(s)	175, 656, 743
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Ksp22I	TGATCA	2 cut(s)	600, 736
Kzo9I	GATC	4 cut(s)	381, 409, 600, 736
LmnI	GCTCC	2 cut(s)	162, 405
Lsp1109I	GCAGC	5 cut(s)	332, 636, 778, 788, 891
LweI	GCATC	2 cut(s)	508, 816
MaeI	CTAG	3 cut(s)	333, 866, 1013
MaeII	ACGT	3 cut(s)	149, 724, 1108
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	4 cut(s)	383, 411, 602, 738
MboI	GATC	4 cut(s)	381, 409, 600, 736
MfeI	CAATTG	2 cut(s)	702, 785
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	402, 462
MluCI	AATT	6 cut(s)	678, 702, 785, 840, 898, 959
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	4 cut(s)	137, 210, 345, 412
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	824
MspI	CCGG	1 cut(s)	510
MunI	CAATTG	2 cut(s)	702, 785
MwoI	GCNNNNNNNGC	2 cut(s)	239, 354
NarI	GGCGCC	1 cut(s)	279
NdeII	GATC	4 cut(s)	381, 409, 600, 736
NlaIII	CATG	3 cut(s)	175, 656, 743
NlaIV	GGNNCC	2 cut(s)	280, 669
NspI	RCATGY	1 cut(s)	656
PaeR7I	CTCGAG	2 cut(s)	428, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	1053
PfeI	GAWTC	3 cut(s)	527, 807, 950
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	232, 347, 651, 778, 793, 906
PleI	GAGTC	4 cut(s)	136, 209, 344, 412
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	4 cut(s)	136, 209, 344, 412
PpuMI	RGGWCCY	1 cut(s)	619
Psp124BI	GAGCTC	2 cut(s)	402, 462
Psp5II	RGGWCCY	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	280, 669
PspPI	GGNCC	1 cut(s)	619
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	3 cut(s)	503, 1039, 1111
RsaNI	GTAC	3 cut(s)	502, 1038, 1110
RseI	CAYNNNNRTG	1 cut(s)	824
SacI	GAGCTC	2 cut(s)	402, 462
SalI	GTCGAC	1 cut(s)	1055
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	6 cut(s)	231, 346, 650, 777, 792, 905
Sau3AI	GATC	4 cut(s)	381, 409, 600, 736
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	4 cut(s)	137, 210, 345, 412
SduI	GDGCHC	2 cut(s)	402, 462
SfaNI	GCATC	2 cut(s)	508, 816
SfoI	GGCGCC	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	428, 443
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	2 cut(s)	428, 443
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	3 cut(s)	428, 443, 1033
SmoI	CTYRAG	3 cut(s)	428, 443, 1033
Sse9I	AATT	6 cut(s)	678, 702, 785, 840, 898, 959
SsiI	CCGC	5 cut(s)	125, 231, 246, 321, 1071
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	3 cut(s)	333, 866, 1013
SstI	GAGCTC	2 cut(s)	402, 462
TaaI	ACNGT	4 cut(s)	11, 376, 712, 815
TaiI	ACGT	3 cut(s)	152, 727, 1111
TaqI	TCGA	7 cut(s)	134, 291, 378, 396, 429, 444, 1056
TasI	AATT	6 cut(s)	678, 702, 785, 840, 898, 959
TatI	WGTACW	1 cut(s)	1037
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	527, 807, 950
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	3 cut(s)	14, 145, 820
TseI	GCWGC	5 cut(s)	345, 649, 776, 791, 904
TspDTI	ATGAA	4 cut(s)	230, 582, 842, 1058
TspRI	CASTG	3 cut(s)	14, 145, 820
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	2 cut(s)	898, 959
XceI	RCATGY	1 cut(s)	656
XhoI	CTCGAG	2 cut(s)	428, 443
XmiI	GTMKAC	1 cut(s)	1056
XspI	CTAG	3 cut(s)	333, 866, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.