Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000573.1

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

169941 .. 174175

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000573.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ctgtacagtgttctgggtcaccatggtgacatgcacagtgtatttcgtgccctggccgtcgaaacggcgtcgtcttcctcctcctcctcctccgcttcgtctccgagagtcttcggctgcgtcatcggcgtccagcgtggtcgcaccgtcgagatcttcaacagcttcgagctcctctacgatcctgagactcactcgctcgagcgtggcttcctcgagaagaaacaagagctctataaaaaggttttcccccatttttacatactgggatggtactctaccggctctgatgctcaggaatctgatatgactattcacaaagctttgatggacatcaatgaaagccctgtttatgttctactcaatcctgtgatcaatcctgctcagaaggacctcccaatcactatttacgaaagtgagctgcatgtcattgatggggttccgcagctaatttttgtcagttcaagctacacaattgagacagtagaagctgaacgtatctcagttgatcatgttgctcatcttaaaccgtctgatggaggttcagcagcaactcaattggctgctcatcttacaggaatccacagtgccatcaagatgctcaatagcagaattagagtgcttcatcactatcttctagctatgcagaaaggagaaataccttgtgaaaattcgctgctaagacaagtatcaagtcttctcagaaggttgcctgctgttgaatcggggaaatttcaagatgactttttgatggaatacaatgacacattgctgattacatatctagctgtgcttaccaactgctcaagtacaatgaacgagctggtcgacaagttcaacaccgcttatgacaggcacagccgaagaggtggaggaggacgtactgctttcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

298

Amino Acids

33.2

Weight (kDa)

6.05

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	3 cut(s)	93, 443, 843
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	670, 731
AcyI	GRCGYC	2 cut(s)	68, 129
AfaI	GTAC	4 cut(s)	5, 275, 811, 883
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	5 cut(s)	160, 465, 722, 737, 838
AjnI	CCWGG	1 cut(s)	51
AleI	CACNNNNGTG	1 cut(s)	24
Alw21I	GWGCWC	2 cut(s)	174, 234
Alw26I	GTCTC	3 cut(s)	105, 182, 473
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	2 cut(s)	200, 215
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	6 cut(s)	117, 421, 445, 548, 563, 676
ApoI	RAATTY	2 cut(s)	670, 731
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	11, 38
AvaI	CYCGRG	2 cut(s)	200, 215
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	174, 234
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BbsI	GAAGAC	3 cut(s)	66, 103, 689
Bbv12I	GWGCWC	2 cut(s)	174, 234
BbvI	GCAGC	6 cut(s)	104, 408, 457, 550, 560, 663
BccI	CCATC	6 cut(s)	264, 322, 428, 530, 599, 745
BceAI	ACGGC	2 cut(s)	41, 81
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	2 cut(s)	372, 508
BcoDI	GTCTC	3 cut(s)	105, 182, 473
BfaI	CTAG	2 cut(s)	638, 785
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	6 cut(s)	118, 422, 446, 549, 564, 677
BlsI	GCNGC	6 cut(s)	119, 423, 447, 550, 565, 678
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	200, 215
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	280, 588
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	3 cut(s)	66, 103, 689
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	68, 129
BsaJI	CCNNGG	2 cut(s)	22, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	767
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	22, 51
BseGI	GGATG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	5 cut(s)	177, 308, 398, 516, 715
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	6 cut(s)	70, 73, 76, 79, 164, 888
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	6 cut(s)	104, 408, 457, 550, 560, 663
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	174, 234
BsiHKCI	CYCGRG	2 cut(s)	200, 215
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	3 cut(s)	105, 182, 473
BsmBI	CGTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	2 cut(s)	200, 215
Bsp1286I	GDGCHC	3 cut(s)	52, 174, 234
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	153, 181, 372, 508
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	3 cut(s)	93, 443, 843
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	5 cut(s)	178, 307, 397, 515, 714
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	767
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	22, 51
BssMI	GATC	4 cut(s)	153, 181, 372, 508
BssNI	GRCGYC	2 cut(s)	68, 129
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	6 cut(s)	8, 38, 148, 484, 531, 587
Bst6I	CTCTTC	1 cut(s)	859
BstACI	GRCGYC	2 cut(s)	68, 129
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	6 cut(s)	186, 294, 384, 502, 680, 701
BstDSI	CCRYGG	1 cut(s)	22
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	4 cut(s)	156, 184, 375, 511
BstMAI	GTCTC	3 cut(s)	105, 182, 473
BstMBI	GATC	4 cut(s)	153, 181, 372, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	34, 428
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	6 cut(s)	104, 408, 457, 550, 560, 663
BstV2I	GAAGAC	3 cut(s)	66, 103, 689
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	3 cut(s)	13, 43, 592
Cac8I	GCNNGC	1 cut(s)	714
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	3 cut(s)	57, 109, 118
Csp6I	GTAC	4 cut(s)	4, 274, 810, 882
CviAII	CATG	4 cut(s)	23, 31, 425, 512
CviQI	GTAC	4 cut(s)	4, 274, 810, 882
DdeI	CTNAG	6 cut(s)	186, 294, 384, 502, 680, 701
DpnI	GATC	4 cut(s)	155, 183, 374, 510
DpnII	GATC	4 cut(s)	153, 181, 372, 508
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
Ecl136II	GAGCTC	2 cut(s)	172, 232
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	174, 234
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	2 cut(s)	172, 232
Eco88I	CYCGRG	2 cut(s)	200, 215
Eco91I	GGTNACC	1 cut(s)	17
EcoICRI	GAGCTC	2 cut(s)	172, 232
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	174, 234
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	4 cut(s)	26, 34, 428, 515
FatI	CATG	4 cut(s)	22, 30, 424, 511
FbaI	TGATCA	2 cut(s)	372, 508
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	6 cut(s)	118, 422, 446, 549, 564, 677
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	2 cut(s)	174, 234
Fsp4HI	GCNGC	6 cut(s)	118, 422, 446, 549, 564, 677
FspBI	CTAG	2 cut(s)	638, 785
GluI	GCNGC	6 cut(s)	118, 422, 446, 549, 564, 677
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	3 cut(s)	57, 109, 118
Hin1I	GRCGYC	2 cut(s)	68, 129
Hin1II	CATG	4 cut(s)	26, 34, 428, 515
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	5 cut(s)	108, 190, 299, 579, 722
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	11, 38
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	7 cut(s)	105, 289, 304, 387, 535, 704, 896
Hpy188III	TCNNGA	6 cut(s)	151, 185, 217, 296, 595, 737
Hpy8I	GTNNAC	1 cut(s)	829
Hpy99I	CGWCG	3 cut(s)	62, 73, 152
HpyAV	CCTTC	2 cut(s)	382, 699
HpyCH4III	ACNGT	6 cut(s)	8, 38, 148, 484, 531, 587
HpyCH4IV	ACGT	2 cut(s)	496, 880
HpyCH4V	TGCA	3 cut(s)	34, 424, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	6 cut(s)	186, 294, 384, 502, 680, 701
HpySE526I	ACGT	2 cut(s)	496, 880
Hsp92I	GRCGYC	2 cut(s)	68, 129
Hsp92II	CATG	4 cut(s)	26, 34, 428, 515
Ksp22I	TGATCA	2 cut(s)	372, 508
Kzo9I	GATC	4 cut(s)	153, 181, 372, 508
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	6 cut(s)	104, 408, 457, 550, 560, 663
LweI	GCATC	2 cut(s)	280, 588
MaeI	CTAG	2 cut(s)	638, 785
MaeII	ACGT	2 cut(s)	496, 880
MaeIII	GTNAC	2 cut(s)	17, 26
MalI	GATC	4 cut(s)	155, 183, 374, 510
MboI	GATC	4 cut(s)	153, 181, 372, 508
MboII	GAAGA	8 cut(s)	66, 103, 148, 232, 626, 689, 876, 883
MfeI	CAATTG	2 cut(s)	474, 557
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	3 cut(s)	52, 174, 234
MluCI	AATT	6 cut(s)	450, 474, 557, 612, 670, 731
MlyI	GAGTC	2 cut(s)	117, 184
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	2 cut(s)	24, 596
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	474, 557
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	4 cut(s)	153, 181, 372, 508
NlaIII	CATG	4 cut(s)	26, 34, 428, 515
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	17, 26
NspI	RCATGY	2 cut(s)	34, 428
OliI	CACNNNNGTG	1 cut(s)	24
PaeR7I	CTCGAG	2 cut(s)	200, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	299, 579, 722
PkrI	GCNGC	6 cut(s)	119, 423, 447, 550, 565, 678
PleI	GAGTC	2 cut(s)	116, 184
PpsI	GAGTC	2 cut(s)	116, 184
PpuMI	RGGWCCY	1 cut(s)	391
Psp124BI	GAGCTC	2 cut(s)	174, 234
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	51
PspEI	GGTNACC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PspXI	VCTCGAGB	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	4 cut(s)	5, 275, 811, 883
RsaNI	GTAC	4 cut(s)	4, 274, 810, 882
RseI	CAYNNNNRTG	2 cut(s)	24, 596
SacI	GAGCTC	2 cut(s)	174, 234
SalI	GTCGAC	1 cut(s)	827
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	118, 422, 446, 549, 564, 677
Sau3AI	GATC	4 cut(s)	153, 181, 372, 508
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	2 cut(s)	117, 184
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	3 cut(s)	52, 174, 234
SfaNI	GCATC	2 cut(s)	280, 588
Sfr274I	CTCGAG	2 cut(s)	200, 215
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	2 cut(s)	200, 215
SmiMI	CAYNNNNRTG	2 cut(s)	24, 596
SmlI	CTYRAG	3 cut(s)	200, 215, 805
SmoI	CTYRAG	3 cut(s)	200, 215, 805
Sse9I	AATT	6 cut(s)	450, 474, 557, 612, 670, 731
SsiI	CCGC	3 cut(s)	93, 443, 843
SspMI	CTAG	2 cut(s)	638, 785
SstI	GAGCTC	2 cut(s)	174, 234
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	6 cut(s)	8, 38, 148, 484, 531, 587
TaiI	ACGT	2 cut(s)	499, 883
TaqI	TCGA	6 cut(s)	60, 150, 168, 201, 216, 828
TasI	AATT	6 cut(s)	450, 474, 557, 612, 670, 731
TatI	WGTACW	2 cut(s)	3, 809
TfiI	GAWTC	3 cut(s)	299, 579, 722
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	3 cut(s)	13, 43, 592
TseFI	GTSAC	2 cut(s)	17, 26
TseI	GCWGC	6 cut(s)	117, 421, 445, 548, 563, 676
Tsp45I	GTSAC	2 cut(s)	17, 26
TspDTI	ATGAA	3 cut(s)	354, 614, 830
TspRI	CASTG	3 cut(s)	13, 43, 592
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	670, 731
XceI	RCATGY	2 cut(s)	34, 428
XhoI	CTCGAG	2 cut(s)	200, 215
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	2 cut(s)	638, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.