Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

3645023 .. 3656449

Gene Structure 11427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1045500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGAATCCTCCAGCAGCGGGCTGACGTTCAAGCTCCACCCACTGGTGATCGTCAACATCTCCGACCACTACTCTAGGGTTAAGTCCCAGATGCAGCCGCCCGTCACCAACACTTCGACACCACCACCGCCCAACAACGGCGCCGACGGAGCAGTAGAAGCAGCCTCCTCTTCTTCCTTCTCCGACTCCGCCTCGTGTCCGCGGGTCTTCGGCTGCGTTATCGGGGTTCAGAGGGGCCGCACGGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGCTACTCACTCCCTCGACCGCGCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCGCACTTTTACATACTGGGGTGGTACTCTACTGGAACAGATGCTCAGGAATCTGACATGAACATCCACAAAGCTCTGATGGATATCAATGAAAGCCCTGTTTATGTCCTTCTCAACCCCTTGATCAATGCTGCTCAAAAGGATCTCCCAATCACTATTTACGAAAGTGAGATGCATGTCATTGATGGGATTCCACAGCTAATCTTTGTCAGCTCAAGCTATACCATTGAGACGGTGGAAGCTGAGCGCATTTCAGTTGATCATGTTGCCCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCTATCAAGATGCTAAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTTGCTATGCAGAAAGGTGATATACCTTGTGAAAATTCACTGCTAAGACAAGTATCAAGTCTTTTGAGAAGGTTGCCTGCCATAGAATCAGGGAAATTTCAAGATGATTTCTTGATGGAATACAATGACACTTTGTTGATTACATATTTGGCTGTGCTGACCAACTGCTCAAGTACAACGAATGAGCTAGTCGACAAGTTCAACACCGCATATGATAGGCACAGTCGAAGAGGTGGACGGACTGCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

330

Amino Acids

36.5

Weight (kDa)

5.99

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 147	8.5e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	196 - 310	4.8e-31	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	2 cut(s)	46, 635
AccI	GTMKAC	1 cut(s)	927
AccII	CGCG	2 cut(s)	205, 306
AclWI	GGATC	2 cut(s)	275, 498
AcsI	RAATTY	2 cut(s)	769, 830
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	374, 910
AfiI	CCNNNNNNNGG	4 cut(s)	21, 46, 140, 635
AgsI	TTSAA	4 cut(s)	34, 259, 836, 937
Alw21I	GWGCWC	2 cut(s)	273, 333
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	275, 498
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	7 cut(s)	18, 97, 164, 216, 479, 647, 662
ApoI	RAATTY	2 cut(s)	769, 830
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	3 cut(s)	146, 308, 597
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	61, 100, 764
AvaI	CYCGRG	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	273, 333
BauI	CACGAG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	2 cut(s)	273, 333
BbvI	GCAGC	7 cut(s)	30, 109, 176, 203, 466, 649, 659
BccI	CCATC	6 cut(s)	421, 527, 627, 629, 637, 844
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	2 cut(s)	471, 607
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	78, 923
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	9 cut(s)	19, 98, 101, 165, 217, 241, 480, 648, 663
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	9 cut(s)	20, 99, 102, 166, 218, 242, 481, 649, 664
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	145, 239
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	4 cut(s)	84, 379, 510, 687
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	547, 889
BsaBI	GATNNNNATC	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 46, 140, 635
Bse1I	ACTGG	3 cut(s)	51, 369, 385
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	4 cut(s)	21, 46, 140, 635
BseMII	CTCAG	2 cut(s)	407, 582
BseNI	ACTGG	3 cut(s)	51, 369, 385
BseRI	GAGGAG	2 cut(s)	160, 263
BseXI	GCAGC	7 cut(s)	30, 109, 176, 203, 466, 649, 659
Bsh1236I	CGCG	2 cut(s)	205, 306
Bsh1285I	CGRYCG	2 cut(s)	249, 304
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	2 cut(s)	249, 304
BsiHKAI	GWGCWC	2 cut(s)	273, 333
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	4 cut(s)	21, 46, 140, 635
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	273, 333
Bsp143I	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
Bsp1720I	GCTNAGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	406, 583
BspFNI	CGCG	2 cut(s)	205, 306
BspLI	GGNNCC	2 cut(s)	145, 239
BspPI	GGATC	2 cut(s)	275, 498
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	51, 369, 385
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	196
Bst4CI	ACNGT	4 cut(s)	247, 583, 686, 959
Bst6I	CTCTTC	2 cut(s)	178, 958
BstACI	GRCGYC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	23, 813
BstDEI	CTNAG	3 cut(s)	393, 591, 779
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	205, 306
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	146, 308, 597
BstKTI	GATC	6 cut(s)	54, 255, 283, 474, 493, 610
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
BstMCI	CGRYCG	2 cut(s)	249, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstNSI	RCATGY	1 cut(s)	527
BstUI	CGCG	2 cut(s)	205, 306
BstV1I	GCAGC	7 cut(s)	30, 109, 176, 203, 466, 649, 659
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	252, 490
BstYI	RGATCY	2 cut(s)	252, 490
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	3 cut(s)	44, 691, 773
Cac8I	GCNNGC	2 cut(s)	23, 813
CfoI	GCGC	3 cut(s)	146, 308, 597
Cfr13I	GGNCC	1 cut(s)	238
Cfr42I	CCGCGG	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	373, 909
CviAII	CATG	3 cut(s)	406, 524, 611
CviQI	GTAC	2 cut(s)	373, 909
DdeI	CTNAG	3 cut(s)	393, 591, 779
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	6 cut(s)	53, 254, 282, 473, 492, 609
DpnII	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
Eam1104I	CTCTTC	2 cut(s)	178, 958
EarI	CTCTTC	2 cut(s)	178, 958
EciI	GGCGGA	2 cut(s)	20, 181
Ecl136II	GAGCTC	2 cut(s)	271, 331
Eco24I	GRGCYC	2 cut(s)	273, 333
Eco32I	GATATC	1 cut(s)	433
Eco53kI	GAGCTC	2 cut(s)	271, 331
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	2 cut(s)	271, 331
EcoRV	GATATC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	273, 333
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	3 cut(s)	409, 527, 614
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	405, 523, 610
FauI	CCCGC	3 cut(s)	14, 198, 357
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	2 cut(s)	471, 607
FblI	GTMKAC	1 cut(s)	927
Fnu4HI	GCNGC	9 cut(s)	19, 98, 101, 165, 217, 241, 480, 648, 663
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	2 cut(s)	273, 333
Fsp4HI	GCNGC	9 cut(s)	19, 98, 101, 165, 217, 241, 480, 648, 663
FspBI	CTAG	2 cut(s)	78, 923
GlaI	GCGC	3 cut(s)	145, 307, 596
GluI	GCNGC	9 cut(s)	19, 98, 101, 165, 217, 241, 480, 648, 663
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	240
HhaI	GCGC	3 cut(s)	146, 308, 597
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	409, 527, 614
Hin6I	GCGC	3 cut(s)	144, 306, 595
HinP1I	GCGC	3 cut(s)	144, 306, 595
HincII	GTYRAC	2 cut(s)	58, 928
HindII	GTYRAC	2 cut(s)	58, 928
HinfI	GANTC	6 cut(s)	8, 188, 398, 538, 678, 821
HphI	GGTGA	3 cut(s)	61, 100, 764
Hpy166II	GTNNAC	3 cut(s)	58, 928, 971
Hpy188I	TCNGA	7 cut(s)	67, 187, 234, 403, 426, 634, 989
Hpy188III	TCNNGA	6 cut(s)	250, 316, 395, 694, 836, 847
Hpy8I	GTNNAC	3 cut(s)	58, 928, 971
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	190, 319, 334, 467, 798
HpyCH4III	ACNGT	4 cut(s)	247, 583, 686, 959
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	97, 523, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpyF3I	CTNAG	3 cut(s)	393, 591, 779
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	409, 527, 614
HspAI	GCGC	3 cut(s)	144, 306, 595
KasI	GGCGCC	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	471, 607
KspI	CCGCGG	1 cut(s)	206
Kzo9I	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
LmnI	GCTCC	3 cut(s)	42, 152, 276
Lsp1109I	GCAGC	7 cut(s)	30, 109, 176, 203, 466, 649, 659
LweI	GCATC	4 cut(s)	84, 379, 510, 687
MaeI	CTAG	2 cut(s)	78, 923
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	6 cut(s)	53, 254, 282, 473, 492, 609
MboI	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
MboII	GAAGA	7 cut(s)	165, 168, 202, 247, 331, 725, 975
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	2 cut(s)	252, 490
MhlI	GDGCHC	2 cut(s)	273, 333
MluCI	AATT	4 cut(s)	656, 711, 769, 830
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	90, 210
Mph1103I	ATGCAT	1 cut(s)	525
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	2 cut(s)	84, 624
MspA1I	CMGCKG	2 cut(s)	21, 205
MunI	CAATTG	1 cut(s)	656
MvnI	CGCG	2 cut(s)	205, 306
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NarI	GGCGCC	1 cut(s)	144
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
NlaIII	CATG	3 cut(s)	409, 527, 614
NlaIV	GGNNCC	2 cut(s)	145, 239
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	525
NspI	RCATGY	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	5 cut(s)	8, 398, 538, 678, 821
PflMI	CCANNNNNTGG	2 cut(s)	46, 635
PkrI	GCNGC	9 cut(s)	20, 99, 102, 166, 218, 242, 481, 649, 664
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	2 cut(s)	273, 333
PspN4I	GGNNCC	2 cut(s)	145, 239
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	252, 490
RsaI	GTAC	2 cut(s)	374, 910
RsaNI	GTAC	2 cut(s)	373, 909
SacI	GAGCTC	2 cut(s)	273, 333
SacII	CCGCGG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	926
SaqAI	TTAA	2 cut(s)	84, 624
SatI	GCNGC	9 cut(s)	19, 98, 101, 165, 217, 241, 480, 648, 663
Sau3AI	GATC	6 cut(s)	51, 252, 280, 471, 490, 607
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	273, 333
SfaNI	GCATC	4 cut(s)	84, 379, 510, 687
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	206
SgrBI	CCGCGG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	3 cut(s)	314, 562, 904
SmoI	CTYRAG	3 cut(s)	314, 562, 904
Sse9I	AATT	4 cut(s)	656, 711, 769, 830
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	78, 923
SstI	GAGCTC	2 cut(s)	273, 333
TaaI	ACNGT	4 cut(s)	247, 583, 686, 959
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	7 cut(s)	119, 249, 267, 300, 315, 927, 961
TasI	AATT	4 cut(s)	656, 711, 769, 830
TatI	WGTACW	1 cut(s)	908
TauI	GCSGC	2 cut(s)	103, 243
TfiI	GAWTC	5 cut(s)	8, 398, 538, 678, 821
Tru1I	TTAA	2 cut(s)	84, 624
Tru9I	TTAA	2 cut(s)	84, 624
TscAI	CASTG	3 cut(s)	51, 691, 780
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	7 cut(s)	18, 97, 164, 216, 479, 647, 662
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	422, 453, 713
TspGWI	ACGGA	2 cut(s)	165, 988
TspRI	CASTG	3 cut(s)	51, 691, 780
Van91I	CCANNNNNTGG	2 cut(s)	46, 635
XapI	RAATTY	2 cut(s)	769, 830
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	927
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	78, 923
Zsp2I	ATGCAT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.