RLG00000015116

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
61961928 .. 61964141
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015116

Sequence Viewer

Length: 963 bp
ATGGCAGATTTTGGTCTGTTTATTCTCTTCCTCATTACGCTGGGTAGCGCTGAGATTGTGTTGATGTTGGTGGTTGGGGGCGTTGTTGATTATGCTCCCCAGCTCGACGATGAAGTGCAAGATGCGGCCTCGTTTGCGGGGATGGCATCTAGATGGTGGATGAGCGATGATTCGGTCTTAGGTGCTGCTTCTTGGCGTGCCACCGTCATGGAAGGTATGCTACTTTGCTTGGACTTCGGGTCTGCTGCTTTTGATGGGGGTGCTCCTGGGTTTAATGGATGCAAGTGTGAAGGCAAGGACGGCTGTCAAATTGTACCTACTACTGGAGGTGAGGACGGTCCTGCCTTCCTCGGGCCCGGACCCTTCATTGGCATCTTAAAATTCTTTTGGTCTGCCGACTCTTTACCGGCGACGGCGAAGTCTAGGTGTCGTTCGATCCGGGCGTTGGTGTGGTTTTTAGGGGCTGTGACCCACGGAGGTGGCGGCGGCAGCTTGCACGGCTGTGATGGATTGCATGTGGTGCCCTTAGCAATTTCGCCCTACTGGGCTAGCTGGGCTTGGCGCTGGTTGGAGGGCCTGTTGTATGGCTGGATGTGGGTGGGCTGGGTCCTACGACTTGTTAGGGCCTGGTCTGCCTTTGGACTGGGGGTTGAGGCTTCGAAAACCAAAAAGGCAAAAAAGCCTAAACGCCCAAATCGGAGAAGAATGGCCGAGTCGTCGAGCAATGGTCTCACGTTCAAGCTCCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCAGGGTCAAGTCTCATATGAACCCTCCCATCGCCGCCGACAACGCCACCGCAACAACTAACAAACACGGCTCCGAAGCCATCGAAGACGAGCATCTTGTTCTCACACGACATAGGGACGTCGGTGCTGTTCAAGGTGCTATCGACATTCGCTGCATCGGAACCATCCGATCAGACTGGTGA

Protein Analysis

321

Amino Acids

34.57

Weight (kDa)

7.1

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AatII GACGTC 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 751
AciI CCGC 6 cut(s) 125, 137, 483, 486, 816, 831
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 900
AfaI GTAC 1 cut(s) 315
AfeI AGCGCT 1 cut(s) 49
AfiI CCNNNNNNNGG 5 cut(s) 323, 351, 368, 445, 751
AgsI TTSAA 2 cut(s) 739, 914
AhdI GACNNNNNGTC 1 cut(s) 238
AjnI CCWGG 3 cut(s) 265, 626, 782
AleI CACNNNNGTG 2 cut(s) 477, 501
AluBI AGCT 4 cut(s) 103, 492, 552, 742
AluI AGCT 4 cut(s) 103, 492, 552, 742
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 734, 798
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 350
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 5 cut(s) 126, 353, 574, 624, 708
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 185, 245, 489, 933
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 50, 564
AspS9I GGNCC 7 cut(s) 338, 353, 354, 359, 574, 607, 624
AsuC2I CCSGG 2 cut(s) 357, 440
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 659
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 3 cut(s) 338, 359, 607
BaeGI GKGCMC 2 cut(s) 357, 525
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 4 cut(s) 172, 232, 501, 920
BccI CCATC 7 cut(s) 136, 147, 248, 500, 818, 869, 953
BceAI ACGGC 4 cut(s) 316, 429, 514, 865
BciT130I CCWGG 3 cut(s) 267, 628, 784
BcnI CCSGG 2 cut(s) 357, 440
BcoDI GTCTC 2 cut(s) 734, 798
BfaI CTAG 3 cut(s) 150, 423, 549
BfoI RGCGCY 2 cut(s) 51, 565
BisI GCNGC 8 cut(s) 126, 186, 246, 484, 487, 490, 816, 934
BlsI GCNGC 8 cut(s) 127, 187, 247, 485, 488, 491, 817, 935
Bme1390I CCNGG 5 cut(s) 267, 357, 440, 628, 784
Bme18I GGWCC 3 cut(s) 338, 359, 607
BmeRI GACNNNNNGTC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 7 cut(s) 338, 353, 354, 359, 574, 607, 624
BmiI GGNNCC 6 cut(s) 355, 361, 522, 608, 853, 943
BmrFI CCNGG 5 cut(s) 267, 357, 440, 628, 784
BmrI ACTGGG 2 cut(s) 553, 653
BmsI GCATC 6 cut(s) 112, 155, 269, 381, 883, 945
BmtI GCTAGC 1 cut(s) 552
BmuI ACTGGG 2 cut(s) 553, 653
BoxI GACNNNNGTC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 873
BpmI CTGGAG 2 cut(s) 345, 766
Bpu10I CCTNAGC 1 cut(s) 526
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 2 cut(s) 357, 440
BsaHI GRCGYC 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 4 cut(s) 266, 349, 472, 783
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 764, 794
Bsc4I CCNNNNNNNGG 5 cut(s) 323, 351, 368, 445, 751
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 4 cut(s) 328, 548, 648, 962
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 3 cut(s) 267, 628, 784
BseDI CCNNGG 4 cut(s) 266, 349, 472, 783
BseGI GGATG 5 cut(s) 147, 165, 284, 597, 945
BseLI CCNNNNNNNGG 5 cut(s) 323, 351, 368, 445, 751
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 4 cut(s) 328, 548, 648, 962
BseSI GKGCMC 2 cut(s) 357, 525
BseXI GCAGC 4 cut(s) 172, 232, 501, 920
BseYI CCCAGC 4 cut(s) 40, 99, 552, 603
BshFI GGCC 5 cut(s) 128, 355, 576, 626, 710
BshNI GGYRCC 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 357, 407, 439
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 5 cut(s) 323, 351, 368, 445, 751
BsmAI GTCTC 2 cut(s) 734, 798
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 5 cut(s) 128, 355, 576, 626, 710
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 659
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 3 cut(s) 265, 357, 525
Bsp143I GATC 2 cut(s) 435, 950
BspACI CCGC 6 cut(s) 125, 137, 483, 486, 816, 831
BspANI GGCC 5 cut(s) 128, 355, 576, 626, 710
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 6 cut(s) 355, 361, 522, 608, 853, 943
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 730
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 4 cut(s) 328, 548, 648, 962
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 4 cut(s) 266, 349, 472, 783
BssMI GATC 2 cut(s) 435, 950
BssNI GRCGYC 1 cut(s) 900
Bst2UI CCWGG 3 cut(s) 267, 628, 784
Bst4CI ACNGT 2 cut(s) 205, 338
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 900
BstAPI GCANNNNNTGC 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 198, 494, 550
BstDEI CTNAG 3 cut(s) 51, 178, 526
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 5 cut(s) 147, 165, 284, 597, 945
BstH2I RGCGCY 2 cut(s) 51, 565
BstHHI GCGC 2 cut(s) 50, 564
BstKTI GATC 2 cut(s) 438, 953
BstMAI GTCTC 2 cut(s) 734, 798
BstMBI GATC 2 cut(s) 435, 950
BstMWI GCNNNNNNNGC 9 cut(s) 134, 143, 300, 489, 498, 520, 554, 632, 824
BstNI CCWGG 3 cut(s) 267, 628, 784
BstNSI RCATGY 1 cut(s) 518
BstPAI GACNNNNGTC 1 cut(s) 303
BstSCI CCNGG 5 cut(s) 265, 355, 438, 626, 782
BstSLI GKGCMC 2 cut(s) 357, 525
BstV1I GCAGC 4 cut(s) 172, 232, 501, 920
BstV2I GAAGAC 1 cut(s) 873
BstXI CCANNNNNNTGG 2 cut(s) 208, 479
BsuRI GGCC 5 cut(s) 128, 355, 576, 626, 710
BtgI CCRYGG 1 cut(s) 472
BtgZI GCGATG 2 cut(s) 180, 796
BtsCI GGATG 5 cut(s) 147, 165, 284, 597, 945
Cac8I GCNNGC 3 cut(s) 198, 494, 550
CfoI GCGC 2 cut(s) 50, 564
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 7 cut(s) 338, 353, 354, 359, 574, 607, 624
Csp6I GTAC 1 cut(s) 314
CviAII CATG 3 cut(s) 208, 515, 757
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 3 cut(s) 51, 178, 526
DpnI GATC 2 cut(s) 437, 952
DpnII GATC 2 cut(s) 435, 950
DrdI GACNNNNNNGTC 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 3 cut(s) 338, 359, 607
Eco47III AGCGCT 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 3 cut(s) 574, 607, 624
EcoRII CCWGG 3 cut(s) 265, 626, 782
EcoT38I GRGCYC 1 cut(s) 357
FaeI CATG 3 cut(s) 211, 518, 760
FaiI YATR 9 cut(s) 93, 209, 218, 516, 585, 758, 798, 800, 894
FaqI GGGAC 1 cut(s) 911
FatI CATG 3 cut(s) 207, 514, 756
FauI CCCGC 1 cut(s) 130
FauNDI CATATG 1 cut(s) 798
Fnu4HI GCNGC 8 cut(s) 126, 186, 246, 484, 487, 490, 816, 934
FokI GGATG 5 cut(s) 154, 172, 291, 604, 932
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 8 cut(s) 126, 186, 246, 484, 487, 490, 816, 934
FspBI CTAG 3 cut(s) 150, 423, 549
GlaI GCGC 2 cut(s) 49, 563
GluI GCNGC 8 cut(s) 126, 186, 246, 484, 487, 490, 816, 934
GsaI CCCAGC 4 cut(s) 44, 103, 556, 607
GsuI CTGGAG 2 cut(s) 345, 766
HaeII RGCGCY 2 cut(s) 51, 565
HaeIII GGCC 5 cut(s) 128, 355, 576, 626, 710
HapII CCGG 3 cut(s) 357, 407, 439
HhaI GCGC 2 cut(s) 50, 564
Hin1I GRCGYC 1 cut(s) 900
Hin1II CATG 3 cut(s) 211, 518, 760
Hin6I GCGC 2 cut(s) 48, 562
HinP1I GCGC 2 cut(s) 48, 562
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 3 cut(s) 170, 398, 713
HpaII CCGG 3 cut(s) 357, 407, 439
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 6 cut(s) 699, 772, 856, 941, 950, 955
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 4 cut(s) 110, 415, 721, 905
HpyAV CCTTC 4 cut(s) 206, 284, 355, 373
HpyCH4III ACNGT 2 cut(s) 205, 338
HpyCH4IV ACGT 2 cut(s) 734, 900
HpyCH4V TGCA 5 cut(s) 118, 282, 496, 514, 936
HpyF10VI GCNNNNNNNGC 9 cut(s) 134, 143, 300, 489, 498, 520, 554, 632, 824
HpyF3I CTNAG 3 cut(s) 51, 178, 526
HpySE526I ACGT 2 cut(s) 734, 900
Hsp92I GRCGYC 1 cut(s) 900
Hsp92II CATG 3 cut(s) 211, 518, 760
HspAI GCGC 2 cut(s) 48, 562
Kzo9I GATC 2 cut(s) 435, 950
LmnI GCTCC 4 cut(s) 100, 268, 747, 857
Lsp1109I GCAGC 4 cut(s) 172, 232, 501, 920
LweI GCATC 6 cut(s) 112, 155, 269, 381, 883, 945
MaeI CTAG 3 cut(s) 150, 423, 549
MaeII ACGT 2 cut(s) 734, 900
MaeIII GTNAC 1 cut(s) 466
MalI GATC 2 cut(s) 437, 952
MboI GATC 2 cut(s) 435, 950
MboII GAAGA 3 cut(s) 19, 714, 878
MhlI GDGCHC 3 cut(s) 265, 357, 525
MluCI AATT 3 cut(s) 309, 380, 531
MlyI GAGTC 2 cut(s) 392, 722
MmeI TCCRAC 2 cut(s) 549, 795
MseI TTAA 2 cut(s) 273, 377
MslI CAYNNNNRTG 4 cut(s) 151, 206, 477, 501
MspI CCGG 3 cut(s) 357, 407, 439
MspR9I CCNGG 5 cut(s) 267, 357, 440, 628, 784
MvaI CCWGG 3 cut(s) 267, 628, 784
MwoI GCNNNNNNNGC 9 cut(s) 134, 143, 300, 489, 498, 520, 554, 632, 824
NciI CCSGG 2 cut(s) 357, 440
NdeI CATATG 1 cut(s) 798
NdeII GATC 2 cut(s) 435, 950
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 3 cut(s) 211, 518, 760
NlaIV GGNNCC 6 cut(s) 355, 361, 522, 608, 853, 943
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 659
OliI CACNNNNGTG 2 cut(s) 477, 501
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PfeI GAWTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 751
PkrI GCNGC 8 cut(s) 127, 187, 247, 485, 488, 491, 817, 935
PleI GAGTC 2 cut(s) 392, 721
PpsI GAGTC 2 cut(s) 392, 721
PpuMI RGGWCCY 1 cut(s) 607
PshAI GACNNNNGTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 3 cut(s) 265, 626, 782
PspFI CCCAGC 4 cut(s) 40, 99, 552, 603
PspGI CCWGG 3 cut(s) 265, 626, 782
PspN4I GGNNCC 6 cut(s) 355, 361, 522, 608, 853, 943
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 7 cut(s) 338, 353, 354, 359, 574, 607, 624
PspPPI RGGWCCY 1 cut(s) 607
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 4 cut(s) 151, 206, 477, 501
SaqAI TTAA 2 cut(s) 273, 377
SatI GCNGC 8 cut(s) 126, 186, 246, 484, 487, 490, 816, 934
Sau3AI GATC 2 cut(s) 435, 950
Sau96I GGNCC 7 cut(s) 338, 353, 354, 359, 574, 607, 624
SchI GAGTC 2 cut(s) 392, 722
ScrFI CCNGG 5 cut(s) 267, 357, 440, 628, 784
SduI GDGCHC 3 cut(s) 265, 357, 525
SfaNI GCATC 6 cut(s) 112, 155, 269, 381, 883, 945
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 3 cut(s) 338, 359, 607
SmiMI CAYNNNNRTG 4 cut(s) 151, 206, 477, 501
Sse9I AATT 3 cut(s) 309, 380, 531
SsiI CCGC 6 cut(s) 125, 137, 483, 486, 816, 831
SspMI CTAG 3 cut(s) 150, 423, 549
StyD4I CCNGG 5 cut(s) 265, 355, 438, 626, 782
TaaI ACNGT 2 cut(s) 205, 338
TaiI ACGT 2 cut(s) 737, 903
TaqI TCGA 6 cut(s) 105, 434, 659, 719, 864, 924
TaqII GACCGA 1 cut(s) 163
TasI AATT 3 cut(s) 309, 380, 531
TauI GCSGC 4 cut(s) 128, 486, 489, 818
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 273, 377
Tru9I TTAA 2 cut(s) 273, 377
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 4 cut(s) 185, 245, 489, 933
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 126, 355, 815
TspGWI ACGGA 1 cut(s) 489
Van91I CCANNNNNTGG 1 cut(s) 751
VpaK11BI GGWCC 3 cut(s) 338, 359, 607
XapI RAATTY 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 518
XspI CTAG 3 cut(s) 150, 423, 549
ZraI GACGTC 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.