Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

80207162 .. 80211262

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCCTATGAAACGCTTAAGATATGTGAGTGGAGAAAGCACACCCGTGATACTTCCTGTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGTTCAAGCTACATCATTGAGACGGTGGAAGCTGAATTCATCTCAGTTGATCATGTTTCTCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAATTGCCATCAAGATGCTCAATAGCAGAGTTAAGAGTGCTTCATCACTACCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAGAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCGAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCATAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

175

Amino Acids

19.78

Weight (kDa)

7.69

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MitMem_reg	PF13012	49 - 154	1.1e-19	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	152, 301, 362
AfaI	GTAC	2 cut(s)	442, 514
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	123, 353, 368, 469
AleI	CACNNNNGTG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	126, 149, 272, 419, 454
AluI	AGCT	5 cut(s)	126, 149, 272, 419, 454
Alw26I	GTCTC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	206, 307
ApoI	RAATTY	3 cut(s)	152, 301, 362
AvaI	CYCGRG	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	218, 294
BccI	CCATC	4 cut(s)	188, 196, 229, 376
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	269, 416
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	207, 308
BlsI	GCNGC	2 cut(s)	208, 309
BmeT110I	CYCGRG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	174, 346
BseRI	GAGGAG	2 cut(s)	105, 519
BseXI	GCAGC	2 cut(s)	218, 294
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	173, 345
BspTI	CTTAAG	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	398
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	490
BstAFI	CTTAAG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	160, 311, 332
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	218, 294
BstV2I	GAAGAC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	441, 513
CviAII	CATG	2 cut(s)	107, 170
CviJI	RGCY	7 cut(s)	85, 126, 149, 272, 419, 454, 492
CviKI_1	RGCY	7 cut(s)	85, 126, 149, 272, 419, 454, 492
CviQI	GTAC	2 cut(s)	441, 513
DdeI	CTNAG	3 cut(s)	160, 311, 332
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	436
EcoRI	GAATTC	2 cut(s)	152, 301
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	110, 173
FaiI	YATR	9 cut(s)	9, 25, 78, 108, 171, 275, 412, 480, 489
FatI	CATG	2 cut(s)	106, 169
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	207, 308
Fsp4HI	GCNGC	2 cut(s)	207, 308
FspBI	CTAG	2 cut(s)	269, 416
GluI	GCNGC	2 cut(s)	207, 308
Hin1II	CATG	2 cut(s)	110, 173
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	112, 353
Hpy166II	GTNNAC	2 cut(s)	62, 460
Hpy188I	TCNGA	5 cut(s)	73, 117, 193, 335, 527
Hpy188III	TCNNGA	2 cut(s)	225, 368
Hpy8I	GTNNAC	2 cut(s)	62, 460
HpyAV	CCTTC	2 cut(s)	275, 330
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	3 cut(s)	160, 311, 332
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	2 cut(s)	110, 173
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	70, 84, 357, 440, 469
Lsp1109I	GCAGC	2 cut(s)	218, 294
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	2 cut(s)	269, 416
MaeII	ACGT	1 cut(s)	511
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	320, 507, 514
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	4 cut(s)	152, 215, 301, 362
MnlI	CCTC	6 cut(s)	83, 86, 191, 491, 497, 500
MseI	TTAA	3 cut(s)	18, 183, 245
MslI	CAYNNNNRTG	2 cut(s)	45, 226
MspCI	CTTAAG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	215
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	110, 173
OliI	CACNNNNGTG	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	112, 353
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	208, 309
PsiI	TTATAA	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	436
RsaI	GTAC	2 cut(s)	442, 514
RsaNI	GTAC	2 cut(s)	441, 513
RseI	CAYNNNNRTG	2 cut(s)	45, 226
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	3 cut(s)	18, 183, 245
SatI	GCNGC	2 cut(s)	207, 308
Sau3AI	GATC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	45, 226
SmlI	CTYRAG	2 cut(s)	17, 436
SmoI	CTYRAG	2 cut(s)	17, 436
Sse9I	AATT	4 cut(s)	152, 215, 301, 362
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	2 cut(s)	269, 416
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	437, 459
TasI	AATT	4 cut(s)	152, 215, 301, 362
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	112, 353
Tru1I	TTAA	3 cut(s)	18, 183, 245
Tru9I	TTAA	3 cut(s)	18, 183, 245
TseI	GCWGC	2 cut(s)	206, 307
TspDTI	ATGAA	4 cut(s)	24, 145, 245, 461
Van91I	CCANNNNNTGG	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	17
XapI	RAATTY	3 cut(s)	152, 301, 362
XhoI	CTCGAG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	2 cut(s)	269, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.