Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

80903672 .. 80906712

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGAGTCGTCGAGCAGTGGTCTCACGTTCAAGCTTCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCCGGGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCCAACAACAACAACGGCGCCGAAGCCGTCGAAACGGCGTCGTCTTCATCCTCCTCCTCCGCTTCGTCTCCGAGAGTCTTCGGCTGCGTCATCGGCGTCCAGCGTGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTAGCTTCCTCGAGAAGAAACAAGAGCTCTATAAGAAGGTTTTCCCCCATTTTTATATACTGGGATGGTACTCGACCGGGTCTGATGCTCAGGAAACTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGTCCTGTTTATGTTCTACTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTCCCAATCACTATTTATGAAAGTGAGCTGCATGTCATTGATGGGGTTCCGCAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGACGGTGGAAGCTGAACGTATCTCAGTTGATCATGTTGCTCATCTTAAGCCGTCTGATGGAGGTTCAGCAGCAACTCAATTGGCTGCTCATCTTACAGGAATCCACAGTGCCATCAAGATGCTCAATAGCAGAATTAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAAAATTCGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTGGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCAAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCACAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

330

Amino Acids

36.47

Weight (kDa)

6.05

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 145	6.9e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	194 - 308	5.7e-32	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	921
AciI	CCGC	6 cut(s)	5, 111, 126, 186, 536, 936
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	763, 824
AcyI	GRCGYC	3 cut(s)	144, 164, 222
AfaI	GTAC	3 cut(s)	368, 904, 976
AfiI	CCNNNNNNNGG	1 cut(s)	629
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	34, 253, 558, 830, 931
Alw21I	GWGCWC	2 cut(s)	267, 327
Alw26I	GTCTC	5 cut(s)	29, 93, 198, 275, 566
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	3 cut(s)	78, 293, 308
ApeKI	GCWGC	6 cut(s)	210, 514, 538, 641, 656, 769
ApoI	RAATTY	2 cut(s)	763, 824
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	3 cut(s)	79, 80, 376
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	3 cut(s)	78, 293, 308
AvaII	GGWCC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	267, 327
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbsI	GAAGAC	3 cut(s)	162, 196, 782
Bbv12I	GWGCWC	2 cut(s)	267, 327
BbvI	GCAGC	6 cut(s)	197, 501, 550, 643, 653, 756
BccI	CCATC	7 cut(s)	113, 357, 415, 521, 623, 692, 838
BceAI	ACGGC	4 cut(s)	137, 157, 177, 607
BclI	TGATCA	2 cut(s)	465, 601
BcnI	CCSGG	3 cut(s)	79, 80, 376
BcoDI	GTCTC	5 cut(s)	29, 93, 198, 275, 566
BfaI	CTAG	2 cut(s)	731, 878
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	617
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	7 cut(s)	111, 211, 515, 539, 642, 657, 770
BlsI	GCNGC	7 cut(s)	112, 212, 516, 540, 643, 658, 771
Bme1390I	CCNGG	3 cut(s)	79, 80, 376
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	3 cut(s)	78, 293, 308
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	145, 534
BmrFI	CCNGG	3 cut(s)	79, 80, 376
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	373, 681
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	3 cut(s)	162, 196, 782
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	883
BpuMI	CCSGG	3 cut(s)	79, 80, 376
BsaBI	GATNNNNATC	1 cut(s)	425
BsaHI	GRCGYC	3 cut(s)	144, 164, 222
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	860
Bse8I	GATNNNNATC	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	173, 368
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	1 cut(s)	860
BseMII	CTCAG	6 cut(s)	104, 270, 401, 491, 609, 808
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	4 cut(s)	169, 172, 257, 981
BseXI	GCAGC	6 cut(s)	197, 501, 550, 643, 653, 756
Bsh1285I	CGRYCG	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	267, 327
BsiHKCI	CYCGRG	3 cut(s)	78, 293, 308
BsiSI	CCGG	2 cut(s)	79, 375
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	5 cut(s)	29, 93, 198, 275, 566
BsmBI	CGTCTC	2 cut(s)	198, 566
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	3 cut(s)	78, 293, 308
Bsp1286I	GDGCHC	2 cut(s)	267, 327
Bsp143I	GATC	4 cut(s)	246, 274, 465, 601
BspACI	CCGC	6 cut(s)	5, 111, 126, 186, 536, 936
BspCNI	CTCAG	6 cut(s)	103, 271, 400, 490, 608, 807
BspLI	GGNNCC	2 cut(s)	145, 534
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	860
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	4 cut(s)	246, 274, 465, 601
BssNI	GRCGYC	3 cut(s)	144, 164, 222
Bst4CI	ACNGT	3 cut(s)	241, 577, 680
Bst6I	CTCTTC	1 cut(s)	952
BstACI	GRCGYC	3 cut(s)	144, 164, 222
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	7 cut(s)	90, 279, 387, 477, 595, 773, 794
BstF5I	GGATG	2 cut(s)	173, 368
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	4 cut(s)	249, 277, 468, 604
BstMAI	GTCTC	5 cut(s)	29, 93, 198, 275, 566
BstMBI	GATC	4 cut(s)	246, 274, 465, 601
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 219
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	77, 78, 374
BstV1I	GCAGC	6 cut(s)	197, 501, 550, 643, 653, 756
BstV2I	GAAGAC	3 cut(s)	162, 196, 782
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	173, 368
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 685
Cac8I	GCNNGC	1 cut(s)	807
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	484
Cfr9I	CCCGGG	1 cut(s)	78
CseI	GACGC	3 cut(s)	153, 202, 211
Csp6I	GTAC	3 cut(s)	367, 903, 975
CviAII	CATG	3 cut(s)	52, 518, 605
CviQI	GTAC	3 cut(s)	367, 903, 975
DdeI	CTNAG	7 cut(s)	90, 279, 387, 477, 595, 773, 794
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	4 cut(s)	248, 276, 467, 603
DpnII	GATC	4 cut(s)	246, 274, 465, 601
Eam1104I	CTCTTC	1 cut(s)	952
EarI	CTCTTC	1 cut(s)	952
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	265, 325
Eco24I	GRGCYC	2 cut(s)	267, 327
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	2 cut(s)	265, 325
Eco88I	CYCGRG	3 cut(s)	78, 293, 308
EcoICRI	GAGCTC	2 cut(s)	265, 325
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	2 cut(s)	267, 327
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
Esp3I	CGTCTC	2 cut(s)	198, 566
FaeI	CATG	3 cut(s)	55, 521, 608
FatI	CATG	3 cut(s)	51, 517, 604
FbaI	TGATCA	2 cut(s)	465, 601
FblI	GTMKAC	1 cut(s)	921
Fnu4HI	GCNGC	7 cut(s)	111, 211, 515, 539, 642, 657, 770
FokI	GGATG	2 cut(s)	160, 375
FriOI	GRGCYC	2 cut(s)	267, 327
Fsp4HI	GCNGC	7 cut(s)	111, 211, 515, 539, 642, 657, 770
FspBI	CTAG	2 cut(s)	731, 878
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	7 cut(s)	111, 211, 515, 539, 642, 657, 770
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	2 cut(s)	79, 375
HgaI	GACGC	3 cut(s)	153, 202, 211
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	3 cut(s)	144, 164, 222
Hin1II	CATG	3 cut(s)	55, 521, 608
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	58, 922
HindII	GTYRAC	2 cut(s)	58, 922
HindIII	AAGCTT	2 cut(s)	35, 414
HinfI	GANTC	5 cut(s)	8, 201, 283, 672, 815
HpaII	CCGG	2 cut(s)	79, 375
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	58, 922
Hpy188I	TCNGA	8 cut(s)	67, 93, 198, 382, 480, 628, 797, 989
Hpy188III	TCNNGA	6 cut(s)	244, 278, 310, 389, 688, 830
Hpy8I	GTNNAC	2 cut(s)	58, 922
Hpy99I	CGWCG	4 cut(s)	16, 158, 169, 245
HpyAV	CCTTC	3 cut(s)	328, 475, 792
HpyCH4III	ACNGT	3 cut(s)	241, 577, 680
HpyCH4IV	ACGT	3 cut(s)	29, 589, 973
HpyCH4V	TGCA	2 cut(s)	517, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 219
HpyF3I	CTNAG	7 cut(s)	90, 279, 387, 477, 595, 773, 794
HpySE526I	ACGT	3 cut(s)	29, 589, 973
Hsp92I	GRCGYC	3 cut(s)	144, 164, 222
Hsp92II	CATG	3 cut(s)	55, 521, 608
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	465, 601
Kzo9I	GATC	4 cut(s)	246, 274, 465, 601
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	6 cut(s)	197, 501, 550, 643, 653, 756
LweI	GCATC	2 cut(s)	373, 681
MaeI	CTAG	2 cut(s)	731, 878
MaeII	ACGT	3 cut(s)	29, 589, 973
MalI	GATC	4 cut(s)	248, 276, 467, 603
MboI	GATC	4 cut(s)	246, 274, 465, 601
MboII	GAAGA	8 cut(s)	162, 196, 241, 325, 719, 782, 969, 976
MfeI	CAATTG	2 cut(s)	567, 650
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	267, 327
MluCI	AATT	6 cut(s)	543, 567, 650, 705, 763, 824
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	3 cut(s)	17, 210, 277
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	2 cut(s)	79, 375
MspR9I	CCNGG	3 cut(s)	79, 80, 376
MunI	CAATTG	2 cut(s)	567, 650
MwoI	GCNNNNNNNGC	2 cut(s)	119, 219
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	3 cut(s)	79, 80, 376
NdeII	GATC	4 cut(s)	246, 274, 465, 601
NlaIII	CATG	3 cut(s)	55, 521, 608
NlaIV	GGNNCC	2 cut(s)	145, 534
NspI	RCATGY	1 cut(s)	521
PaeR7I	CTCGAG	2 cut(s)	293, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	672, 815
PflFI	GACNNNGTC	1 cut(s)	376
PkrI	GCNGC	7 cut(s)	112, 212, 516, 540, 643, 658, 771
PleI	GAGTC	3 cut(s)	16, 209, 277
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	3 cut(s)	16, 209, 277
PpuMI	RGGWCCY	1 cut(s)	484
Psp124BI	GAGCTC	2 cut(s)	267, 327
Psp5II	RGGWCCY	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	145, 534
PspPI	GGNCC	1 cut(s)	484
PspPPI	RGGWCCY	1 cut(s)	484
PspXI	VCTCGAGB	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	376
RsaI	GTAC	3 cut(s)	368, 904, 976
RsaNI	GTAC	3 cut(s)	367, 903, 975
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	2 cut(s)	267, 327
SalI	GTCGAC	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	7 cut(s)	111, 211, 515, 539, 642, 657, 770
Sau3AI	GATC	4 cut(s)	246, 274, 465, 601
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	3 cut(s)	17, 210, 277
ScrFI	CCNGG	3 cut(s)	79, 80, 376
SduI	GDGCHC	2 cut(s)	267, 327
SfaNI	GCATC	2 cut(s)	373, 681
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	2 cut(s)	293, 308
SinI	GGWCC	1 cut(s)	484
SlaI	CTCGAG	2 cut(s)	293, 308
SmaI	CCCGGG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	4 cut(s)	293, 308, 617, 898
SmoI	CTYRAG	4 cut(s)	293, 308, 617, 898
Sse9I	AATT	6 cut(s)	543, 567, 650, 705, 763, 824
SsiI	CCGC	6 cut(s)	5, 111, 126, 186, 536, 936
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	731, 878
SstI	GAGCTC	2 cut(s)	267, 327
StyD4I	CCNGG	3 cut(s)	77, 78, 374
TaaI	ACNGT	3 cut(s)	241, 577, 680
TaiI	ACGT	3 cut(s)	32, 592, 976
TaqI	TCGA	8 cut(s)	14, 156, 243, 261, 294, 309, 371, 921
TasI	AATT	6 cut(s)	543, 567, 650, 705, 763, 824
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	672, 815
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	25, 685
TseI	GCWGC	6 cut(s)	210, 514, 538, 641, 656, 769
TspDTI	ATGAA	6 cut(s)	110, 162, 447, 519, 707, 923
TspMI	CCCGGG	1 cut(s)	78
TspRI	CASTG	2 cut(s)	25, 685
Tth111I	GACNNNGTC	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	763, 824
XceI	RCATGY	1 cut(s)	521
XhoI	CTCGAG	2 cut(s)	293, 308
XmaI	CCCGGG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	921
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	731, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.