Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Reverse (-)

22783384 .. 22785605

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCACCTTCGTCATCAAGCGGTTTAACCTTCAAGCTACATCCTTTGGTAATCGTCAACATATCGGATCACTACACTAGGGTCAAAACTCAGCTCAATCCTCCTGCTTCAATCTGCGCAAGCGGCCATGGCTCAAACAACGGCGAAGCAATGTTCCAGCAAAACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCGTACTGTTGAGATATTCAACAGTTTCGAGCTTTTATATGATCCTTCTACTCAAACCCTTGATAGATCTTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCTGATTTCTATATTCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGCTTTGATGGATATCAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCTATCAATCACACACAGAAGGATCTTCCAGTGACTATTTATGAAAGTGAATTGCATGTCATTGATGGAATCCCGCAGCTAATTTTCGCTCATACAAGCTACACAATCGAGACAGTTGAAGCTGAACGGATATCAGTTGATCATGTTGCACATCTTAAACCATCTGACGGAGGCTCAGCAGCAACCCAGTTGGCTGCTCATCTTACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTTTACCAAAATCTTGCTGCAATGCAGAAAGGTGATAAATCTTGTGACAACTCAGTTCTGAGACAAGTATCTAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATAATTTCTTGATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAGCAACATGAACGAGATGGTCGACAAATTCAACACCGCATATGACAGAAACACTCGAAGAGGTGGAAGAACTGCATTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

317

Amino Acids

35.66

Weight (kDa)

6.31

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	7 - 135	6.8e-22	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	184 - 298	2.6e-29	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	643, 891
AciI	CCGC	4 cut(s)	21, 123, 506, 906
AclWI	GGATC	3 cut(s)	75, 239, 462
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	896
AfaI	GTAC	3 cut(s)	208, 338, 821
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	6 cut(s)	34, 111, 223, 551, 800, 901
AluBI	AGCT	8 cut(s)	37, 94, 235, 295, 386, 511, 531, 554
AluI	AGCT	8 cut(s)	37, 94, 235, 295, 386, 511, 531, 554
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	536, 739
AlwI	GGATC	3 cut(s)	75, 239, 462
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	508, 611, 626, 701
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	728
AvaI	CYCGRG	1 cut(s)	278
AvrII	CCTAGG	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	520, 613, 623, 688
BccI	CCATC	7 cut(s)	327, 385, 491, 601, 662, 808, 880
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	536, 739
BfaI	CTAG	4 cut(s)	78, 168, 756, 848
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	5 cut(s)	124, 509, 612, 627, 702
BlnI	CCTAGG	1 cut(s)	167
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	125, 510, 613, 628, 703
BmeT110I	CYCGRG	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	343, 651
BmuI	ACTGGG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	127, 167, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	3 cut(s)	461, 619, 643
Bse3DI	GCAATG	2 cut(s)	156, 711
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	127, 167, 780
BseGI	GGATG	3 cut(s)	40, 185, 338
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	2 cut(s)	156, 711
BseMII	CTCAG	5 cut(s)	104, 348, 621, 734, 750
BseNI	ACTGG	3 cut(s)	461, 619, 643
BseXI	GCAGC	4 cut(s)	520, 613, 623, 688
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	536, 739
BsmI	GAATGC	1 cut(s)	944
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
Bsp1720I	GCTNAGC	1 cut(s)	607
Bsp19I	CCATGG	2 cut(s)	127, 780
BspACI	CCGC	4 cut(s)	21, 123, 506, 906
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	5 cut(s)	103, 349, 620, 735, 749
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	75, 239, 462
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	156, 711
BsrI	ACTGG	3 cut(s)	461, 619, 643
BssECI	CCNNGG	3 cut(s)	127, 167, 780
BssMI	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	3 cut(s)	127, 167, 780
Bst1107I	GTATAC	1 cut(s)	644
Bst4CI	ACNGT	3 cut(s)	211, 227, 547
Bst6I	CTCTTC	1 cut(s)	922
BstC8I	GCNNGC	3 cut(s)	121, 761, 777
BstDEI	CTNAG	6 cut(s)	90, 357, 607, 736, 743, 764
BstDSI	CCRYGG	2 cut(s)	127, 780
BstF5I	GGATG	3 cut(s)	40, 185, 338
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	6 cut(s)	70, 189, 247, 272, 457, 574
BstMAI	GTCTC	2 cut(s)	536, 739
BstMBI	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 129
BstNSI	RCATGY	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	520, 613, 623, 688
BstX2I	RGATCY	2 cut(s)	269, 454
BstYI	RGATCY	2 cut(s)	269, 454
BstZ17I	GTATAC	1 cut(s)	644
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	2 cut(s)	127, 780
BtgZI	GCGATG	1 cut(s)	866
BtsCI	GGATG	3 cut(s)	40, 185, 338
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	121, 761, 777
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	207, 337, 820
CviAII	CATG	6 cut(s)	128, 488, 575, 781, 877, 949
CviQI	GTAC	3 cut(s)	207, 337, 820
DdeI	CTNAG	6 cut(s)	90, 357, 607, 736, 743, 764
DpnI	GATC	6 cut(s)	69, 188, 246, 271, 456, 573
DpnII	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
DraI	TTTAAA	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	922
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	3 cut(s)	127, 167, 780
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	2 cut(s)	397, 564
Eco53kI	GAGCTC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	295
EcoRV	GATATC	2 cut(s)	397, 564
EcoT14I	CCWWGG	3 cut(s)	127, 167, 780
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	3 cut(s)	127, 167, 780
FaeI	CATG	6 cut(s)	131, 491, 578, 784, 880, 952
FatI	CATG	6 cut(s)	127, 487, 574, 780, 876, 948
FauI	CCCGC	1 cut(s)	513
FauNDI	CATATG	1 cut(s)	910
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	2 cut(s)	643, 891
Fnu4HI	GCNGC	5 cut(s)	124, 509, 612, 627, 702
FokI	GGATG	3 cut(s)	27, 192, 345
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	5 cut(s)	124, 509, 612, 627, 702
FspBI	CTAG	4 cut(s)	78, 168, 756, 848
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	124, 509, 612, 627, 702
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	6 cut(s)	131, 491, 578, 784, 880, 952
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	58, 892
HindII	GTYRAC	2 cut(s)	58, 892
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	5 cut(s)	362, 404, 501, 675, 785
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	4 cut(s)	58, 175, 644, 892
Hpy188I	TCNGA	6 cut(s)	67, 367, 598, 680, 744, 790
Hpy188III	TCNNGA	6 cut(s)	196, 280, 541, 658, 800, 811
Hpy8I	GTNNAC	4 cut(s)	58, 175, 644, 892
HpyAV	CCTTC	5 cut(s)	18, 40, 258, 298, 445
HpyCH4III	ACNGT	3 cut(s)	211, 227, 547
HpyCH4V	TGCA	6 cut(s)	373, 487, 581, 704, 709, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 129
HpyF3I	CTNAG	6 cut(s)	90, 357, 607, 736, 743, 764
Hsp92II	CATG	6 cut(s)	131, 491, 578, 784, 880, 952
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
Lsp1109I	GCAGC	4 cut(s)	520, 613, 623, 688
LweI	GCATC	2 cut(s)	343, 651
MaeI	CTAG	4 cut(s)	78, 168, 756, 848
MaeIII	GTNAC	2 cut(s)	463, 728
MalI	GATC	6 cut(s)	69, 188, 246, 271, 456, 573
MboI	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
MboII	GAAGA	5 cut(s)	295, 449, 780, 939, 948
MflI	RGATCY	2 cut(s)	269, 454
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	6 cut(s)	482, 513, 805, 830, 862, 896
MnlI	CCTC	6 cut(s)	111, 194, 287, 352, 596, 923
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	4 cut(s)	26, 425, 588, 666
MslI	CAYNNNNRTG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	944
MwoI	GCNNNNNNNGC	2 cut(s)	123, 129
NcoI	CCATGG	2 cut(s)	127, 780
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
NlaIII	CATG	6 cut(s)	131, 491, 578, 784, 880, 952
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	463, 728
NsbI	TGCGCA	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PctI	GAATGC	1 cut(s)	944
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	5 cut(s)	362, 404, 501, 675, 785
PkrI	GCNGC	5 cut(s)	125, 510, 613, 628, 703
Psp124BI	GAGCTC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	269, 454
RsaI	GTAC	3 cut(s)	208, 338, 821
RsaNI	GTAC	3 cut(s)	207, 337, 820
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	890
SaqAI	TTAA	4 cut(s)	26, 425, 588, 666
SatI	GCNGC	5 cut(s)	124, 509, 612, 627, 702
Sau3AI	GATC	6 cut(s)	67, 186, 244, 269, 454, 571
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	2 cut(s)	343, 651
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	6 cut(s)	482, 513, 805, 830, 862, 896
SsiI	CCGC	4 cut(s)	21, 123, 506, 906
SspMI	CTAG	4 cut(s)	78, 168, 756, 848
SstI	GAGCTC	1 cut(s)	297
StyI	CCWWGG	3 cut(s)	127, 167, 780
TaaI	ACNGT	3 cut(s)	211, 227, 547
TaqI	TCGA	5 cut(s)	231, 279, 540, 891, 925
TasI	AATT	6 cut(s)	482, 513, 805, 830, 862, 896
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	5 cut(s)	362, 404, 501, 675, 785
Tru1I	TTAA	4 cut(s)	26, 425, 588, 666
Tru9I	TTAA	4 cut(s)	26, 425, 588, 666
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	2 cut(s)	463, 728
TseI	GCWGC	4 cut(s)	508, 611, 626, 701
Tsp45I	GTSAC	2 cut(s)	463, 728
TspDTI	ATGAA	4 cut(s)	417, 489, 893, 937
TspGWI	ACGGA	3 cut(s)	192, 574, 615
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	896
XceI	RCATGY	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	643, 891
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	4 cut(s)	78, 168, 756, 848
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.