Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004313

Physical Location & Seq

Genomic Coordinates Forward (+)

80547130 .. 80550971

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG507700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAACACTGTTACGAGCAAAAAAAGAAGCAGAGGAGCTTCGAAAACCAGAAAGGCGAAAAAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGCCTGAAACCCCCAAATCGGAGAAGAATGGCGGAGTCATCGAGCAGTGGTCTCACGTTCAAGCTCCACCCTCTGGTCATGGTCAACATCTCCGACCACTACTCCCGAGTCAAGTCTCAGATGAACCCTCCCATCGCCGCCCACAACGCCACCGCAACAACCACCACCACCAACAACAACGGCGCCGAAGCCGTCGAAACGGCGTCGTCTTCCTCCTCCTCCTCCTCCGCTTCGTCTCCGAGAGTCTTCGGCTGCGTCATCGGCGTCCAGCGTGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGATCCTGAGACTCACTCGCTCGAGCGTGGCTTCCTCGAGAAGAAACAAGAGCTCTATAAAAAGGTTTTCCCTCATTTTTACATACTGGGATGGTACTCTACCGGCTCTGATGCTCAGGAATCTGATATGACTATTCACAAAGCTTTGATGGATATCAATGAAAGCCCTGTTTATGTTCTACTCAATCCTGTGATCAATCCTGCTCAGAAGGACCTCCCAATCACTATTTACGAAAGTGAGCTGCATGTCATTGATGGGGTTCCGCAGCTAATTTTTGTCAGTTCAAGCTACACAATTGAGGTTGGAGATGTTCATTCTTATCTACCTTTAAAGTCATCTAACTATTATCAATCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

254

Amino Acids

28.57

Weight (kDa)

6.32

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	46 - 189	1.2e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26430 AT5G56280
fragaria_vesca	FvH4_3g41360 FvH4_3g41360 FvH4_3g41360
malus_domestica	MD03G1045500.v1.1 MD11G1047700.v1.1
prunus_persica	Prupe.6G036800_v2.0.a1 Prupe.6G036800_v2.0.a1
pyrus_communis	pycom03g03560 pycom11g03880
rosa_chinensis	RchiOBHm_Chr5g0074251 RchiOBHm_Chr5g0074261 RchiOBHm_Chr5g0075511
rosa_laevigata	RLG00000015116 RLG00000036461 RLG00000036572
rosa_multiflora	Rmu_sc0000573.1_g000052 Rmu_sc0004706.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007220 Rroxscaffold_2G00101540
rosa_rugosa	Rorug05G0429800
rosa_samantha	Rh5AG487400 Rh5AG497200 Rh5BG507700 Rh5CG531300 Rh5CG541800 Rh5DG520600 Rh6BG228700 Rh6DG222200
rosa_wichuraiana	Rw5G045240 Rw5G046100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	5 cut(s)	122, 228, 243, 318, 668
AclWI	GGATC	1 cut(s)	401
AcyI	GRCGYC	3 cut(s)	273, 293, 354
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	108, 163
AgsI	TTSAA	3 cut(s)	151, 385, 690
AluBI	AGCT	9 cut(s)	39, 154, 390, 397, 457, 548, 646, 673, 693
AluI	AGCT	9 cut(s)	39, 154, 390, 397, 457, 548, 646, 673, 693
Alw21I	GWGCWC	2 cut(s)	399, 459
Alw26I	GTCTC	4 cut(s)	146, 210, 330, 407
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	3 cut(s)	195, 425, 440
ApeKI	GCWGC	3 cut(s)	342, 646, 670
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	616
AsuII	TTCGAA	1 cut(s)	42
AvaI	CYCGRG	3 cut(s)	195, 425, 440
AvaII	GGWCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	399, 459
BbsI	GAAGAC	2 cut(s)	291, 328
Bbv12I	GWGCWC	2 cut(s)	399, 459
BbvI	GCAGC	3 cut(s)	329, 633, 682
BccI	CCATC	4 cut(s)	230, 489, 547, 653
BceAI	ACGGC	3 cut(s)	266, 286, 306
BclI	TGATCA	1 cut(s)	597
BcoDI	GTCTC	4 cut(s)	146, 210, 330, 407
BfoI	RGCGCY	1 cut(s)	276
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	4 cut(s)	228, 343, 647, 671
BlsI	GCNGC	4 cut(s)	229, 344, 648, 672
Bme18I	GGWCC	1 cut(s)	616
BmeT110I	CYCGRG	3 cut(s)	195, 425, 440
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	274, 666
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	291, 328
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	3 cut(s)	273, 293, 354
BsaI	GGTCTC	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 163
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	557
BseGI	GGATG	1 cut(s)	500
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	2 cut(s)	108, 163
BseMII	CTCAG	4 cut(s)	221, 402, 533, 623
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	6 cut(s)	49, 295, 298, 301, 304, 389
BseXI	GCAGC	3 cut(s)	329, 633, 682
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	399, 459
BsiHKCI	CYCGRG	3 cut(s)	195, 425, 440
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	108, 163
BsmAI	GTCTC	4 cut(s)	146, 210, 330, 407
BsmBI	CGTCTC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	3 cut(s)	195, 425, 440
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	399, 459
Bsp143I	GATC	3 cut(s)	378, 406, 597
BspACI	CCGC	5 cut(s)	122, 228, 243, 318, 668
BspCNI	CTCAG	4 cut(s)	220, 403, 532, 622
BspLI	GGNNCC	2 cut(s)	274, 666
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	506
BssMI	GATC	3 cut(s)	378, 406, 597
BssNI	GRCGYC	3 cut(s)	273, 293, 354
Bst4CI	ACNGT	2 cut(s)	11, 373
BstACI	GRCGYC	3 cut(s)	273, 293, 354
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	207, 411, 519, 609
BstF5I	GGATG	1 cut(s)	500
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	381, 409, 600
BstMAI	GTCTC	4 cut(s)	146, 210, 330, 407
BstMBI	GATC	3 cut(s)	378, 406, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 351
BstNSI	RCATGY	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	329, 633, 682
BstV2I	GAAGAC	2 cut(s)	291, 328
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	7, 142
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	616
CseI	GACGC	3 cut(s)	282, 334, 343
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	2 cut(s)	169, 650
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	207, 411, 519, 609
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	3 cut(s)	380, 408, 599
DpnII	GATC	3 cut(s)	378, 406, 597
DraI	TTTAAA	1 cut(s)	735
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	2 cut(s)	397, 457
Eco24I	GRGCYC	2 cut(s)	399, 459
Eco31I	GGTCTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	616
Eco53kI	GAGCTC	2 cut(s)	397, 457
Eco88I	CYCGRG	3 cut(s)	195, 425, 440
EcoICRI	GAGCTC	2 cut(s)	397, 457
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	399, 459
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	172, 653
FaiI	YATR	6 cut(s)	170, 462, 488, 533, 579, 651
FatI	CATG	2 cut(s)	168, 649
FbaI	TGATCA	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	228, 343, 647, 671
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	2 cut(s)	399, 459
Fsp4HI	GCNGC	4 cut(s)	228, 343, 647, 671
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	228, 343, 647, 671
HaeII	RGCGCY	1 cut(s)	276
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	3 cut(s)	282, 334, 343
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	3 cut(s)	273, 293, 354
Hin1II	CATG	2 cut(s)	172, 653
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	5 cut(s)	125, 198, 333, 415, 524
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	7 cut(s)	111, 184, 210, 330, 514, 529, 612
Hpy188III	TCNNGA	5 cut(s)	195, 376, 410, 442, 521
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	287, 298, 377
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	2 cut(s)	11, 373
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 351
HpyF3I	CTNAG	4 cut(s)	207, 411, 519, 609
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	3 cut(s)	273, 293, 354
Hsp92II	CATG	2 cut(s)	172, 653
HspAI	GCGC	1 cut(s)	273
KasI	GGCGCC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	378, 406, 597
LmnI	GCTCC	3 cut(s)	36, 159, 402
Lsp1109I	GCAGC	3 cut(s)	329, 633, 682
LweI	GCATC	1 cut(s)	505
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	380, 408, 599
MboI	GATC	3 cut(s)	378, 406, 597
MboII	GAAGA	5 cut(s)	126, 291, 328, 373, 457
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	399, 459
MluCI	AATT	2 cut(s)	675, 699
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	4 cut(s)	134, 207, 342, 409
MmeI	TCCRAC	2 cut(s)	207, 688
MseI	TTAA	1 cut(s)	734
MspI	CCGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	699
MwoI	GCNNNNNNNGC	2 cut(s)	236, 351
NarI	GGCGCC	1 cut(s)	273
NdeII	GATC	3 cut(s)	378, 406, 597
NlaIII	CATG	2 cut(s)	172, 653
NlaIV	GGNNCC	2 cut(s)	274, 666
NspI	RCATGY	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	42
PaeR7I	CTCGAG	2 cut(s)	425, 440
PfeI	GAWTC	1 cut(s)	524
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	4 cut(s)	229, 344, 648, 672
PleI	GAGTC	4 cut(s)	133, 206, 341, 409
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	4 cut(s)	133, 206, 341, 409
PpuMI	RGGWCCY	1 cut(s)	616
Psp124BI	GAGCTC	2 cut(s)	399, 459
Psp5II	RGGWCCY	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	274, 666
PspPI	GGNCC	1 cut(s)	616
PspPPI	RGGWCCY	1 cut(s)	616
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SacI	GAGCTC	2 cut(s)	399, 459
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	4 cut(s)	228, 343, 647, 671
Sau3AI	GATC	3 cut(s)	378, 406, 597
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	4 cut(s)	134, 207, 342, 409
SduI	GDGCHC	2 cut(s)	399, 459
SfaNI	GCATC	1 cut(s)	505
SfoI	GGCGCC	1 cut(s)	274
Sfr274I	CTCGAG	2 cut(s)	425, 440
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	2 cut(s)	425, 440
SmlI	CTYRAG	2 cut(s)	425, 440
SmoI	CTYRAG	2 cut(s)	425, 440
Sse9I	AATT	2 cut(s)	675, 699
SsiI	CCGC	5 cut(s)	122, 228, 243, 318, 668
SspDI	GGCGCC	1 cut(s)	272
SstI	GAGCTC	2 cut(s)	399, 459
TaaI	ACNGT	2 cut(s)	11, 373
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	7 cut(s)	42, 131, 285, 375, 393, 426, 441
TasI	AATT	2 cut(s)	675, 699
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	2 cut(s)	14, 142
TseI	GCWGC	3 cut(s)	342, 646, 670
TspDTI	ATGAA	3 cut(s)	227, 579, 707
TspRI	CASTG	2 cut(s)	14, 142
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	616
XceI	RCATGY	1 cut(s)	653
XhoI	CTCGAG	2 cut(s)	425, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.