Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

14697489 .. 14698430

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGACCGTGACATCACTTGTCTTCATTGTTAACTTACTTATCATTTTTACATCAGTTGTGAATCAGGCTAGAGGAGATACATGTATAGATGGATTAGGCTATTGCAACAATTGTGACGAGAGATGCAAGGCCAAGCACGGACCATCGAGCGAAAGCAGCTGTGATCGTAGTGTTGGGGTGCCGCTGTGCAAATGCTACTACGAATGTGAATCTCCGCCATCACCACCCGCGCCGCCGAAGAAATGCGACGGTGGGGCTGGTATATGTAGTCAAAGATGTCAAGGACAATGTTGTGATATGAACTGTGCACAAAAGTATATTGGTGGACATGGATTTTGTAATACTCTTGGTACGTTTAGTTTCTGCCAATGCGAATATCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

129

Amino Acids

13.86

Weight (kDa)

5.57

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	233
AciI	CCGC	4 cut(s)	185, 218, 231, 236
AfaI	GTAC	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	83
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	309
AoxI	GGCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	3 cut(s)	86, 154, 229
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	3 cut(s)	160, 185, 236
BlsI	GCNGC	3 cut(s)	161, 186, 237
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	4 cut(s)	185, 218, 231, 236
BspANI	GGCC	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	181
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	10, 254, 308
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	2 cut(s)	84, 332
CviJI	RGCY	5 cut(s)	71, 102, 134, 162, 260
CviKI_1	RGCY	5 cut(s)	71, 102, 134, 162, 260
CviQI	GTAC	1 cut(s)	354
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	143
FaeI	CATG	2 cut(s)	87, 335
FaiI	YATR	7 cut(s)	85, 89, 266, 268, 302, 321, 333
FatI	CATG	2 cut(s)	83, 331
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	160, 185, 236
Fsp4HI	GCNGC	3 cut(s)	160, 185, 236
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	3 cut(s)	160, 185, 236
HaeIII	GGCC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	87, 335
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	64, 212
HpaI	GTTAAC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	3 cut(s)	34, 311, 329
Hpy8I	GTNNAC	3 cut(s)	34, 311, 329
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	3 cut(s)	10, 254, 308
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	4 cut(s)	108, 129, 192, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	87, 335
HspAI	GCGC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	2 cut(s)	53, 246
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	10, 116
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	16, 253
MfeI	CAATTG	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	33, 388
MspA1I	CMGCKG	2 cut(s)	162, 187
MunI	CAATTG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	87, 335
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	10, 116
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	64, 212
PkrI	GCNGC	3 cut(s)	161, 186, 237
PscI	ACATGT	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	33, 388
SatI	GCNGC	3 cut(s)	160, 185, 236
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	2 cut(s)	164, 359
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	4 cut(s)	185, 218, 231, 236
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	10, 254, 308
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	112
TauI	GCSGC	2 cut(s)	187, 238
TfiI	GAWTC	2 cut(s)	64, 212
Tru1I	TTAA	2 cut(s)	33, 388
Tru9I	TTAA	2 cut(s)	33, 388
TseFI	GTSAC	2 cut(s)	10, 116
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	2 cut(s)	10, 116
TspDTI	ATGAA	2 cut(s)	16, 317
TspGWI	ACGGA	1 cut(s)	156
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.