Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

12945878 .. 12952045

Gene Structure 6168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTATCACATCCTGCACTCGGCTTGTTCTCCTTGCTTTTGCATCAGCTGCCATAATGGGGATGTTGGTGAAGGCAGAAATATGCAACAAATCGATCGGTTCTTGTCAAGGCATCGACCGCAACCAAGTCTGCGTCAACAAACATCCCGGTGGCTCCGGCACATGTGATCAAACAAACACATGCCAGTGCTATTTCGACTGTCAACCAAGAAAGACATGCAATGCCGGCTTGGGTTATTGCAGTGCCAGTTGCAATGACCAGTGTTGTGCTCAAAACTGTGCAAGCAAATATCAAGGTGGAGTTGGATATTGTGACACCCTAGGCTGGACATCGTTGTGTCAATGCAACCCCGAGTTTGCCACCGAGTCGGACTCGTGCGGGTCGACCTCGCTCCACCTTACGGCGGCCAAGGGACATATAGGGGTCGTGAGGGAGCTGCTCGGGATCGACATGGCTGCGTGTTTGGTGAGGAATCGGGATGGGAGGACGACGCTTAGCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

169

Amino Acids

17.86

Weight (kDa)

7.8

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	3 cut(s)	121, 381, 407
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	408
AfiI	CCNNNNNNNGG	5 cut(s)	21, 60, 327, 403, 406
AflIII	ACRYGT	1 cut(s)	164
AluBI	AGCT	2 cut(s)	50, 439
AluI	AGCT	2 cut(s)	50, 439
Alw21I	GWGCWC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	353, 443
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	50, 439, 458
AspA2I	CCTAGG	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	82, 481
AvaI	CYCGRG	2 cut(s)	353, 443
AvrII	CCTAGG	1 cut(s)	322
BauI	CACGAG	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	37, 426, 445
BccI	CCATC	1 cut(s)	476
BceAI	ACGGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	4 cut(s)	51, 408, 440, 459
BlnI	CCTAGG	1 cut(s)	322
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	4 cut(s)	52, 409, 441, 460
Bme1390I	CCNGG	1 cut(s)	150
BmeT110I	CYCGRG	2 cut(s)	353, 443
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	53, 123
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	322, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 60, 327, 403, 406
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	187, 249, 262
Bse3DI	GCAATG	2 cut(s)	229, 262
BseCI	ATCGAT	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	322, 411
BseGI	GGATG	4 cut(s)	11, 69, 145, 487
BseLI	CCNNNNNNNGG	5 cut(s)	21, 60, 327, 403, 406
BseMI	GCAATG	2 cut(s)	229, 262
BseNI	ACTGG	3 cut(s)	187, 249, 262
BseXI	GCAGC	3 cut(s)	37, 426, 445
Bsh1285I	CGRYCG	2 cut(s)	99, 121
BshFI	GGCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	95
BsiEI	CGRYCG	2 cut(s)	99, 121
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	2 cut(s)	353, 443
BsiSI	CCGG	3 cut(s)	150, 159, 228
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	5 cut(s)	21, 60, 327, 403, 406
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	410
BsoBI	CYCGRG	2 cut(s)	353, 443
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	96, 169, 447
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	3 cut(s)	121, 381, 407
BspANI	GGCC	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	229, 262
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	187, 249, 262
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	322, 411
BssMI	GATC	3 cut(s)	96, 169, 447
BssSI	CACGAG	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	322, 411
Bst2BI	CACGAG	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	203, 281, 506
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	229, 286
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	11, 69, 145, 487
BstKTI	GATC	3 cut(s)	99, 172, 450
BstMBI	GATC	3 cut(s)	96, 169, 447
BstMCI	CGRYCG	2 cut(s)	99, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 120, 228
BstNSI	RCATGY	3 cut(s)	168, 186, 222
BstSCI	CCNGG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	37, 426, 445
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	410
BsuTUI	ATCGAT	1 cut(s)	95
BtsCI	GGATG	4 cut(s)	11, 69, 145, 487
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	194, 250, 269
Cac8I	GCNNGC	2 cut(s)	229, 286
Cfr10I	RCCGGY	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	95
CseI	GACGC	2 cut(s)	124, 502
CviAII	CATG	4 cut(s)	165, 183, 219, 454
CviJI	RGCY	9 cut(s)	5, 25, 50, 156, 231, 327, 410, 439, 458
CviKI_1	RGCY	9 cut(s)	5, 25, 50, 156, 231, 327, 410, 439, 458
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	3 cut(s)	98, 171, 449
DpnII	GATC	3 cut(s)	96, 169, 447
EaeI	YGGCCR	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	322, 411
Eco88I	CYCGRG	2 cut(s)	353, 443
EcoT14I	CCWWGG	2 cut(s)	322, 411
ErhI	CCWWGG	2 cut(s)	322, 411
FaeI	CATG	4 cut(s)	168, 186, 222, 457
FaiI	YATR	8 cut(s)	56, 85, 166, 184, 220, 420, 422, 455
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	164, 182, 218, 453
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	51, 408, 440, 459
FokI	GGATG	3 cut(s)	76, 132, 494
Fsp4HI	GCNGC	4 cut(s)	51, 408, 440, 459
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	4 cut(s)	51, 408, 440, 459
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	150, 159, 228
HgaI	GACGC	2 cut(s)	124, 502
Hin1II	CATG	4 cut(s)	168, 186, 222, 457
HincII	GTYRAC	3 cut(s)	139, 206, 387
HindII	GTYRAC	3 cut(s)	139, 206, 387
HinfI	GANTC	3 cut(s)	368, 374, 475
HpaII	CCGG	3 cut(s)	150, 159, 228
HphI	GGTGA	2 cut(s)	82, 481
Hpy166II	GTNNAC	3 cut(s)	139, 206, 387
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	3 cut(s)	430, 445, 479
Hpy8I	GTNNAC	3 cut(s)	139, 206, 387
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	203, 281, 506
HpyCH4V	TGCA	8 cut(s)	18, 44, 87, 222, 243, 255, 284, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 120, 228
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	168, 186, 222, 457
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	96, 169, 447
LmnI	GCTCC	3 cut(s)	161, 399, 436
LpnPI	CCDG	8 cut(s)	28, 163, 172, 200, 241, 262, 275, 313
Lsp1109I	GCAGC	3 cut(s)	37, 426, 445
LweI	GCATC	2 cut(s)	53, 123
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	98, 171, 449
MboI	GATC	3 cut(s)	96, 169, 447
MhlI	GDGCHC	1 cut(s)	274
MlyI	GAGTC	2 cut(s)	368, 377
MmeI	TCCRAC	2 cut(s)	286, 351
MnlI	CCTC	4 cut(s)	400, 426, 465, 480
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	3 cut(s)	150, 187, 337
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	3 cut(s)	150, 159, 228
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	50, 120, 228
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	96, 169, 447
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	168, 186, 222, 457
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	3 cut(s)	168, 186, 222
PciI	ACATGT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	52, 409, 441, 460
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	368, 376
PpsI	GAGTC	2 cut(s)	368, 376
PscI	ACATGT	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	50
RseI	CAYNNNNRTG	3 cut(s)	150, 187, 337
SalI	GTCGAC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	4 cut(s)	51, 408, 440, 459
Sau3AI	GATC	3 cut(s)	96, 169, 447
SchI	GAGTC	2 cut(s)	368, 377
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	52, 301, 392, 402, 441
SfaNI	GCATC	2 cut(s)	53, 123
SmiMI	CAYNNNNRTG	3 cut(s)	150, 187, 337
SsiI	CCGC	3 cut(s)	121, 381, 407
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	322, 411
TaaI	ACNGT	3 cut(s)	203, 281, 506
TaqI	TCGA	5 cut(s)	95, 117, 198, 386, 450
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	3 cut(s)	194, 250, 269
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	50, 439, 458
Tsp45I	GTSAC	1 cut(s)	314
TspRI	CASTG	3 cut(s)	194, 250, 269
XceI	RCATGY	3 cut(s)	168, 186, 222
XmaJI	CCTAGG	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.