Rroxscaffold_175G00431890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0003779
Physical Location & Seq
Reverse (-)
10982 .. 17110
6129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00431890.1

Sequence Viewer

Length: 267 bp
ATGTGGGCTTTGGATTGTATTGACCAAGTCTCTCGATATGAGACTTGTCTCCCAATTTCCAATGTGGAAATTGGATTAATTAATTTCATGAGCCCAAATTGGGTTCCTTGTCCGAGTTCGCCACCGAGTTGGACTCGTGCAGGTCGACCTCGCTCCACCGAAGGCGCCAAGGGTCATGTAGGGGTCGTTAAGGAGCTGCTCGGACTCGACATGGCTGCGTGTTTGGTGAGGAATCGGATGGGAGGACGATGCTTAGCAGTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

7.63

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 3 cut(s) 34, 35, 53
ApeKI GCWGC 2 cut(s) 196, 215
AseI ATTAAT 2 cut(s) 77, 81
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 238
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 95
BauI CACGAG 1 cut(s) 135
BbvI GCAGC 2 cut(s) 183, 202
BccI CCATC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BcoDI GTCTC 3 cut(s) 34, 35, 53
BfoI RGCGCY 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 197, 216
BlpI GCTNAGC 1 cut(s) 253
BlsI GCNGC 2 cut(s) 198, 217
BmiI GGNNCC 2 cut(s) 105, 166
BmsI GCATC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 118, 150
Bpu1102I GCTNAGC 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 183, 202
BsgI GTGCAG 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 3 cut(s) 34, 35, 53
Bsp1286I GDGCHC 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 253
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 105, 166
BspMI ACCTGC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstMAI GTCTC 3 cut(s) 34, 35, 53
BstV1I GCAGC 2 cut(s) 183, 202
BstXI CCANNNNNNTGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 167
CviAII CATG 3 cut(s) 88, 176, 211
CviJI RGCY 4 cut(s) 8, 93, 196, 215
CviKI_1 RGCY 4 cut(s) 8, 93, 196, 215
DdeI CTNAG 1 cut(s) 253
DinI GGCGCC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 91, 179, 214
FaiI YATR 4 cut(s) 39, 89, 177, 212
FatI CATG 3 cut(s) 87, 175, 210
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 197, 216
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 197, 216
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 197, 216
HaeII RGCGCY 1 cut(s) 168
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 91, 179, 214
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 3 cut(s) 133, 204, 232
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 114, 203, 237
Hpy188III TCNNGA 2 cut(s) 33, 88
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 91, 179, 214
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 158, 193
LpnPI CCDG 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 183, 202
LweI GCATC 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 5 cut(s) 54, 69, 78, 82, 97
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 2 cut(s) 127, 198
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 159, 222, 236
MseI TTAA 4 cut(s) 77, 81, 189, 265
NarI GGCGCC 1 cut(s) 165
NlaIII CATG 3 cut(s) 91, 179, 214
NlaIV GGNNCC 2 cut(s) 105, 166
PacI TTAATTAA 1 cut(s) 81
PagI TCATGA 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 198, 217
PleI GAGTC 2 cut(s) 127, 198
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 2 cut(s) 127, 198
PshBI ATTAAT 2 cut(s) 77, 81
PspN4I GGNNCC 2 cut(s) 105, 166
PsyI GACNNNGTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 144
SaqAI TTAA 4 cut(s) 77, 81, 189, 265
SatI GCNGC 2 cut(s) 197, 216
SchI GAGTC 2 cut(s) 127, 198
SduI GDGCHC 1 cut(s) 95
SetI ASST 3 cut(s) 145, 151, 198
SfaNI GCATC 1 cut(s) 239
SfoI GGCGCC 1 cut(s) 166
Sse9I AATT 5 cut(s) 54, 69, 78, 82, 97
SspDI GGCGCC 1 cut(s) 164
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 4 cut(s) 34, 145, 207, 261
TasI AATT 5 cut(s) 54, 69, 78, 82, 97
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 4 cut(s) 77, 81, 189, 265
Tru9I TTAA 4 cut(s) 77, 81, 189, 265
TseI GCWGC 2 cut(s) 196, 215
TspDTI ATGAA 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 26
VspI ATTAAT 2 cut(s) 77, 81
XmiI GTMKAC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.