Rroxscaffold_5G00345150

Defensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
15455366 .. 15470433
15068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345150.1

Sequence Viewer

Length: 1239 bp
ATGTGGGTTCTTTTTGGGTTTTGTAGAGTAAGGAAAGAATTTACCTTGTCTTTGAGTACTTGTGATGGTGGTGACTTGGCGGCTTATATACGGCGCCATGGGAAAGTTTCGAAGCGTGGCCGGGCACTTCATGAGGCAATTGGGTATTGTGTTCTATGCTCGGTACACGGGATTGCAAGTGCTTCGGGAAAAGCACCTCATCCACCGGGATTTAAAACCACGTTGGCTGCTACCCGGTTGTATTTAATCTTGACAAACTTGTTTGCTTTGCGAGCTCCAAACAAGGACAGCAAGCTGCGGTGTCGAGAAAATGCCATAGTTATGAGTTTTAAATCGAGGGTTGGAGCTGCGTTTTCCATGGTTTACATATTTGGAGCTCCGGTCATGTTTGTTGGGTGTGGGCGGTGCTACACACACCTAAAAAAGTTGAATGTAAAATCAATTGTGAAGACCCCTTTGGTTAGAATGCTTAGTCGGAGGCCCGAGAGATTTCTTAAGGAAAAAGAGAGAGATGAAGTGGGCGATGGGTGCGGCGGATCGAGGGTTCCTGTTGTGGGCTTGGAAGAGGGTCATAGAGATTGCAACGGCGGCGACGATCATAGCCATAGTGAAGTAGAGAATGACATGCCAGCTAGTGCAGTAGGAAAGAAGAAGTCGGTGGAGCTCGGCACCGGTTGGATCGTCGGACTTTTATTGGGGGTCAATAAACCTCCTTCATTCGACAACTTGCCCGTGGACCTCGGCGACCTCTTCGGTGACATCCGGAGATGTCTAGCAAGGGTACGAAGTTCCAACAAAGTCCGTCGATATCCGGGGAGGTTATGGAAAATTCCGACGAAGTTTCAAGATTCAAGATTCCGGCAAGGTTCCGGCAAAGTCTCCATATTTGGGAAGGAAGAAGACAAGCTCTCCCCCATGGCTATCACATCCTGCACTCGGCTTGTTCTCCTTGCTTTTGCATCAGCTGCCATAATGGGGATGTTGGTGAAGGCAGAAATATGCAACGAATCGATCGGTTCTTGTCAAGGCATCGACTGCAACCAAGTCTGCGTCAACAAACATCCCGGTGGCTCCGGCACATGTGATCAAACAAACACATGCCAGTGCTATTTCGACTGTCCACCAAGAAAGACATGCAATGTCGGCTTGGGTTATTGCGGTGCCGTTGCAATGACCAGTGTTGTGCTCAAAACTGTGCAAGCAAATATCAAGGTGGAGTTGGATATTGTGACACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

412

Amino Acids

44.9

Weight (kDa)

9.38

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 93, 668, 1160
AccIII TCCGGA 1 cut(s) 762
AciI CCGC 7 cut(s) 80, 298, 403, 531, 534, 588, 1158
AclWI GGATC 2 cut(s) 544, 686
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 2 cut(s) 38, 828
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 3 cut(s) 58, 165, 783
AfiI CCNNNNNNNGG 4 cut(s) 554, 888, 936, 975
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 1079
AgeI ACCGGT 1 cut(s) 671
AgsI TTSAA 3 cut(s) 430, 845, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 528, 560
AluBI AGCT 8 cut(s) 275, 295, 347, 377, 632, 664, 907, 965
AluI AGCT 8 cut(s) 275, 295, 347, 377, 632, 664, 907, 965
Alw21I GWGCWC 4 cut(s) 277, 379, 666, 1188
Alw26I GTCTC 1 cut(s) 883
AlwI GGATC 2 cut(s) 544, 686
Ama87I CYCGRG 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 762
AoxI GGCC 2 cut(s) 118, 479
ApeKI GCWGC 4 cut(s) 227, 295, 347, 965
ApoI RAATTY 2 cut(s) 38, 828
AsiGI ACCGGT 1 cut(s) 671
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 480, 736
AsuC2I CCSGG 5 cut(s) 122, 207, 235, 813, 1065
AsuHPI GGTGA 3 cut(s) 83, 767, 997
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 1 cut(s) 127
BanI GGYRCC 3 cut(s) 93, 668, 1160
BanII GRGCYC 3 cut(s) 277, 379, 666
BbsI GAAGAC 2 cut(s) 455, 906
Bbv12I GWGCWC 4 cut(s) 277, 379, 666, 1188
BbvI GCAGC 4 cut(s) 214, 282, 334, 952
BccI CCATC 2 cut(s) 59, 518
BceAI ACGGC 3 cut(s) 107, 601, 1148
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BclI TGATCA 1 cut(s) 1084
BcnI CCSGG 5 cut(s) 122, 207, 235, 813, 1065
BcoDI GTCTC 1 cut(s) 883
BfaI CTAG 3 cut(s) 633, 773, 1237
BfoI RGCGCY 1 cut(s) 97
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 7 cut(s) 81, 228, 296, 348, 532, 589, 966
BlsI GCNGC 7 cut(s) 82, 229, 297, 349, 533, 590, 967
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 5 cut(s) 122, 207, 235, 813, 1065
Bme18I GGWCC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 480, 736
BmiI GGNNCC 6 cut(s) 95, 546, 670, 868, 1072, 1162
BmrFI CCNGG 5 cut(s) 122, 207, 235, 813, 1065
BmsI GCATC 2 cut(s) 968, 1038
BpiI GAAGAC 2 cut(s) 455, 906
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 5 cut(s) 122, 207, 235, 813, 1065
Bsa29I ATCGAT 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 6 cut(s) 97, 357, 732, 739, 812, 915
BsaWI WCCGGW 3 cut(s) 379, 671, 762
BsaXI ACNNNNNCTCC 4 cut(s) 366, 396, 893, 923
Bsc4I CCNNNNNNNGG 4 cut(s) 554, 888, 936, 975
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 1102, 1176
Bse3DI GCAATG 2 cut(s) 1144, 1176
BseAI TCCGGA 1 cut(s) 762
BseCI ATCGAT 1 cut(s) 1010
BseDI CCNNGG 6 cut(s) 97, 357, 732, 739, 812, 915
BseGI GGATG 5 cut(s) 199, 759, 926, 984, 1060
BseLI CCNNNNNNNGG 4 cut(s) 554, 888, 936, 975
BseMI GCAATG 2 cut(s) 1144, 1176
BseNI ACTGG 2 cut(s) 1102, 1176
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 4 cut(s) 214, 282, 334, 952
BsgI GTGCAG 2 cut(s) 657, 916
Bsh1285I CGRYCG 1 cut(s) 1014
BshFI GGCC 2 cut(s) 120, 481
BshNI GGYRCC 3 cut(s) 93, 668, 1160
BshTI ACCGGT 1 cut(s) 671
BshVI ATCGAT 1 cut(s) 1010
BsiEI CGRYCG 1 cut(s) 1014
BsiHKAI GWGCWC 4 cut(s) 277, 379, 666, 1188
BsiHKCI CYCGRG 1 cut(s) 482
BslI CCNNNNNNNGG 4 cut(s) 554, 888, 936, 975
BsmAI GTCTC 1 cut(s) 883
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 2 cut(s) 120, 481
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 5 cut(s) 127, 277, 379, 666, 1188
Bsp13I TCCGGA 1 cut(s) 762
Bsp143I GATC 5 cut(s) 536, 595, 678, 1011, 1084
Bsp19I CCATGG 3 cut(s) 97, 357, 915
BspACI CCGC 7 cut(s) 80, 298, 403, 531, 534, 588, 1158
BspANI GGCC 2 cut(s) 120, 481
BspDI ATCGAT 1 cut(s) 1010
BspEI TCCGGA 1 cut(s) 762
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 6 cut(s) 95, 546, 670, 868, 1072, 1162
BspPI GGATC 2 cut(s) 544, 686
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 3 cut(s) 93, 668, 1160
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 2 cut(s) 1144, 1176
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 2 cut(s) 1102, 1176
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 6 cut(s) 97, 357, 732, 739, 812, 915
BssMI GATC 5 cut(s) 536, 595, 678, 1011, 1084
BssNI GRCGYC 1 cut(s) 94
BssT1I CCWWGG 3 cut(s) 97, 357, 915
Bst4CI ACNGT 2 cut(s) 1118, 1195
Bst6I CTCTTC 2 cut(s) 558, 755
BstACI GRCGYC 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 2 cut(s) 965, 1035
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 4 cut(s) 273, 293, 630, 1200
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 4 cut(s) 97, 357, 732, 915
BstF5I GGATG 5 cut(s) 199, 759, 926, 984, 1060
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 539, 598, 681, 1014, 1087
BstMAI GTCTC 1 cut(s) 883
BstMBI GATC 5 cut(s) 536, 595, 678, 1011, 1084
BstMCI CGRYCG 1 cut(s) 1014
BstMWI GCNNNNNNNGC 6 cut(s) 272, 528, 588, 965, 1035, 1143
BstNSI RCATGY 4 cut(s) 628, 1083, 1101, 1137
BstSCI CCNGG 5 cut(s) 120, 205, 233, 811, 1063
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 4 cut(s) 214, 282, 334, 952
BstV2I GAAGAC 2 cut(s) 455, 906
Bsu15I ATCGAT 1 cut(s) 1010
BsuRI GGCC 2 cut(s) 120, 481
BsuTUI ATCGAT 1 cut(s) 1010
BtgI CCRYGG 4 cut(s) 97, 357, 732, 915
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 5 cut(s) 199, 759, 926, 984, 1060
BtsIMutI CAGTG 2 cut(s) 1109, 1183
Cac8I GCNNGC 4 cut(s) 273, 293, 630, 1200
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 2 cut(s) 480, 736
ClaI ATCGAT 1 cut(s) 1010
CseI GACGC 1 cut(s) 1039
Csp6I GTAC 3 cut(s) 57, 164, 782
CspAI ACCGGT 1 cut(s) 671
CviAII CATG 9 cut(s) 98, 131, 358, 385, 625, 916, 1080, 1098, 1134
CviQI GTAC 3 cut(s) 57, 164, 782
DdeI CTNAG 1 cut(s) 470
DinI GGCGCC 1 cut(s) 95
DpnI GATC 5 cut(s) 538, 597, 680, 1013, 1086
DpnII GATC 5 cut(s) 536, 595, 678, 1011, 1084
DraI TTTAAA 2 cut(s) 214, 331
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 558, 755
EarI CTCTTC 2 cut(s) 558, 755
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 3 cut(s) 275, 377, 664
Eco130I CCWWGG 3 cut(s) 97, 357, 915
Eco24I GRGCYC 3 cut(s) 277, 379, 666
Eco32I GATATC 1 cut(s) 809
Eco47I GGWCC 1 cut(s) 736
Eco53kI GAGCTC 3 cut(s) 275, 377, 664
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 3 cut(s) 275, 377, 664
EcoRV GATATC 1 cut(s) 809
EcoT14I CCWWGG 3 cut(s) 97, 357, 915
EcoT38I GRGCYC 3 cut(s) 277, 379, 666
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
ErhI CCWWGG 3 cut(s) 97, 357, 915
FaeI CATG 9 cut(s) 101, 134, 361, 388, 628, 919, 1083, 1101, 1137
FatI CATG 9 cut(s) 97, 130, 357, 384, 624, 915, 1079, 1097, 1133
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 7 cut(s) 81, 228, 296, 348, 532, 589, 966
FokI GGATG 5 cut(s) 186, 746, 913, 991, 1047
FriOI GRGCYC 3 cut(s) 277, 379, 666
Fsp4HI GCNGC 7 cut(s) 81, 228, 296, 348, 532, 589, 966
FspBI CTAG 3 cut(s) 633, 773, 1237
GlaI GCGC 1 cut(s) 95
GluI GCNGC 7 cut(s) 81, 228, 296, 348, 532, 589, 966
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 2 cut(s) 120, 481
HgaI GACGC 1 cut(s) 1039
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 9 cut(s) 101, 134, 361, 388, 628, 919, 1083, 1101, 1137
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HinfI GANTC 3 cut(s) 848, 855, 1007
HphI GGTGA 3 cut(s) 83, 767, 997
Hpy166II GTNNAC 5 cut(s) 166, 364, 736, 1054, 1121
Hpy188I TCNGA 3 cut(s) 477, 686, 834
Hpy188III TCNNGA 7 cut(s) 131, 186, 250, 305, 763, 845, 852
Hpy8I GTNNAC 5 cut(s) 166, 364, 736, 1054, 1121
Hpy99I CGWCG 4 cut(s) 596, 686, 807, 838
HpyAV CCTTC 3 cut(s) 723, 886, 982
HpyCH4III ACNGT 2 cut(s) 1118, 1195
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 6 cut(s) 272, 528, 588, 965, 1035, 1143
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 9 cut(s) 101, 134, 361, 388, 628, 919, 1083, 1101, 1137
HspAI GCGC 1 cut(s) 94
KasI GGCGCC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 5 cut(s) 536, 595, 678, 1011, 1084
LmnI GCTCC 6 cut(s) 280, 344, 374, 382, 661, 1076
Lsp1109I GCAGC 4 cut(s) 214, 282, 334, 952
LweI GCATC 2 cut(s) 968, 1038
MaeI CTAG 3 cut(s) 633, 773, 1237
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 71, 755, 1228
MalI GATC 5 cut(s) 538, 597, 680, 1013, 1086
MboI GATC 5 cut(s) 536, 595, 678, 1011, 1084
MboII GAAGA 6 cut(s) 460, 575, 661, 742, 908, 911
MfeI CAATTG 2 cut(s) 138, 441
MhlI GDGCHC 5 cut(s) 127, 277, 379, 666, 1188
MluCI AATT 4 cut(s) 38, 138, 441, 828
Mly113I GGCGCC 1 cut(s) 94
MmeI TCCRAC 7 cut(s) 322, 455, 656, 664, 816, 857, 1200
MroI TCCGGA 1 cut(s) 762
MseI TTAA 4 cut(s) 213, 245, 330, 495
MslI CAYNNNNRTG 3 cut(s) 320, 1065, 1102
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 5 cut(s) 122, 207, 235, 813, 1065
MunI CAATTG 2 cut(s) 138, 441
Mva1269I GAATGC 1 cut(s) 471
MwoI GCNNNNNNNGC 6 cut(s) 272, 528, 588, 965, 1035, 1143
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 5 cut(s) 122, 207, 235, 813, 1065
NcoI CCATGG 3 cut(s) 97, 357, 915
NdeII GATC 5 cut(s) 536, 595, 678, 1011, 1084
NlaIII CATG 9 cut(s) 101, 134, 361, 388, 628, 919, 1083, 1101, 1137
NlaIV GGNNCC 6 cut(s) 95, 546, 670, 868, 1072, 1162
NmeAIII GCCGAG 3 cut(s) 645, 720, 916
NmuCI GTSAC 3 cut(s) 71, 755, 1228
NspI RCATGY 4 cut(s) 628, 1083, 1101, 1137
NspV TTCGAA 1 cut(s) 110
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 848, 855, 1007
PinAI ACCGGT 1 cut(s) 671
PkrI GCNGC 7 cut(s) 82, 229, 297, 349, 533, 590, 967
Ple19I CGATCG 1 cut(s) 1014
PluTI GGCGCC 1 cut(s) 97
PscI ACATGT 1 cut(s) 1079
Psp124BI GAGCTC 3 cut(s) 277, 379, 666
PspN4I GGNNCC 6 cut(s) 95, 546, 670, 868, 1072, 1162
PspPI GGNCC 2 cut(s) 480, 736
PvuI CGATCG 1 cut(s) 1014
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 3 cut(s) 58, 165, 783
RsaNI GTAC 3 cut(s) 57, 164, 782
RseI CAYNNNNRTG 3 cut(s) 320, 1065, 1102
SacI GAGCTC 3 cut(s) 277, 379, 666
SaqAI TTAA 4 cut(s) 213, 245, 330, 495
SatI GCNGC 7 cut(s) 81, 228, 296, 348, 532, 589, 966
Sau3AI GATC 5 cut(s) 536, 595, 678, 1011, 1084
Sau96I GGNCC 2 cut(s) 480, 736
ScaI AGTACT 1 cut(s) 58
ScrFI CCNGG 5 cut(s) 122, 207, 235, 813, 1065
SduI GDGCHC 5 cut(s) 127, 277, 379, 666, 1188
SfaNI GCATC 2 cut(s) 968, 1038
SfoI GGCGCC 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 3 cut(s) 320, 1065, 1102
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 4 cut(s) 38, 138, 441, 828
SsiI CCGC 7 cut(s) 80, 298, 403, 531, 534, 588, 1158
SspDI GGCGCC 1 cut(s) 93
SspMI CTAG 3 cut(s) 633, 773, 1237
SstI GAGCTC 3 cut(s) 277, 379, 666
StyD4I CCNGG 5 cut(s) 120, 205, 233, 811, 1063
StyI CCWWGG 3 cut(s) 97, 357, 915
TaaI ACNGT 2 cut(s) 1118, 1195
TaiI ACGT 1 cut(s) 224
TaqI TCGA 9 cut(s) 110, 304, 335, 539, 720, 805, 1010, 1032, 1113
TasI AATT 4 cut(s) 38, 138, 441, 828
TatI WGTACW 1 cut(s) 56
TauI GCSGC 3 cut(s) 83, 534, 591
TfiI GAWTC 3 cut(s) 848, 855, 1007
Tru1I TTAA 4 cut(s) 213, 245, 330, 495
Tru9I TTAA 4 cut(s) 213, 245, 330, 495
TscAI CASTG 2 cut(s) 1109, 1183
TseFI GTSAC 3 cut(s) 71, 755, 1228
TseI GCWGC 4 cut(s) 227, 295, 347, 965
Tsp45I GTSAC 3 cut(s) 71, 755, 1228
TspDTI ATGAA 3 cut(s) 119, 528, 705
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 2 cut(s) 1109, 1183
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 2 cut(s) 38, 828
XceI RCATGY 4 cut(s) 628, 1083, 1101, 1137
XspI CTAG 3 cut(s) 633, 773, 1237
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.