Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

13933812 .. 13934504

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTGATCACCGTAAAGGGTGACATATGCTCCGAAGGTTTGGGTGAATGCGGCAATGACTGTGACGAACGATGTCGTTCTAAGCATCTAGGGCAAAATCCTCAGGGATCTTGTGAAACTGAGATTTTGCCTCCATTGTGTACGTGCAACTACGAGTGTGGTTCATTGCCACCAAGTCCTCCAGAACCACCAAAAAGAGATTGCAACGCAGGACTTGGCCCGTGCTCCGCTGATTGCAGCGATGACTGCTGTAATTCAGAATGTGCTAGCCAATTTAACCAAAGGGATAGCCAATTCAGAATGTGTAATATTGTTGTCCCATTTCTGCTTATACAGGAGGAAGCTTCTACCATCAAGGCAGCTGGAAAAGCATGGTACCAAACGATGATCTCCGACAGTGATTACACCGAGTTTGACGTCGTCCAGAAGTGGCTTGGTGTATCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

149

Amino Acids

16.27

Weight (kDa)

4.34

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AciI	CCGC	2 cut(s)	51, 228
AclWI	GGATC	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	2 cut(s)	142, 377
AluBI	AGCT	2 cut(s)	344, 362
AluI	AGCT	2 cut(s)	344, 362
Alw21I	GWGCWC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	237, 359
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	32, 56
AsuNHI	GCTAGC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	249, 371
BccI	CCATC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	6
BfaI	CTAG	2 cut(s)	89, 267
BisI	GCNGC	3 cut(s)	52, 238, 360
BlsI	GCNGC	3 cut(s)	53, 239, 361
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	94
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	445
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	2 cut(s)	61, 164
BseMI	GCAATG	2 cut(s)	61, 164
BseMII	CTCAG	2 cut(s)	111, 116
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	249, 371
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	6, 107, 387
BspACI	CCGC	2 cut(s)	51, 228
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	112, 115
BspLI	GGNNCC	1 cut(s)	377
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	61, 164
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	6, 107, 387
BssNI	GRCGYC	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	13, 62, 398
BstACI	GRCGYC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	3 cut(s)	81, 102, 120
BstKTI	GATC	3 cut(s)	9, 110, 390
BstMBI	GATC	3 cut(s)	6, 107, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 246, 368
BstV1I	GCAGC	2 cut(s)	249, 371
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	141, 376
CviAII	CATG	1 cut(s)	372
CviJI	RGCY	6 cut(s)	219, 270, 291, 344, 362, 433
CviKI_1	RGCY	6 cut(s)	219, 270, 291, 344, 362, 433
CviQI	GTAC	2 cut(s)	141, 376
DdeI	CTNAG	3 cut(s)	81, 102, 120
DpnI	GATC	3 cut(s)	8, 109, 389
DpnII	GATC	3 cut(s)	6, 107, 387
Eco81I	CCTNAGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	375
FaiI	YATR	4 cut(s)	26, 28, 332, 373
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	52, 238, 360
Fsp4HI	GCNGC	3 cut(s)	52, 238, 360
FspBI	CTAG	2 cut(s)	89, 267
GluI	GCNGC	3 cut(s)	52, 238, 360
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	342
HphI	GGTGA	2 cut(s)	32, 56
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	4 cut(s)	34, 259, 299, 394
Hpy188III	TCNNGA	2 cut(s)	182, 424
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	3 cut(s)	13, 62, 398
HpyCH4IV	ACGT	2 cut(s)	143, 417
HpyCH4V	TGCA	3 cut(s)	147, 204, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 246, 368
HpyF3I	CTNAG	3 cut(s)	81, 102, 120
HpySE526I	ACGT	2 cut(s)	143, 417
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	375
KpnI	GGTACC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	6, 107, 387
LmnI	GCTCC	2 cut(s)	35, 230
LpnPI	CCDG	6 cut(s)	89, 195, 195, 320, 348, 437
Lsp1109I	GCAGC	2 cut(s)	249, 371
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	89, 267
MaeII	ACGT	2 cut(s)	143, 417
MaeIII	GTNAC	2 cut(s)	20, 62
MalI	GATC	3 cut(s)	8, 109, 389
MboI	GATC	3 cut(s)	6, 107, 387
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	253, 272, 293
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	4 cut(s)	111, 141, 189, 331
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	230, 362
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	91, 246, 368
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	3 cut(s)	6, 107, 387
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	20, 62
PctI	GAATGC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	53, 239, 361
Ppu21I	YACGTR	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	142, 377
RsaNI	GTAC	2 cut(s)	141, 376
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	52, 238, 360
Sau3AI	GATC	3 cut(s)	6, 107, 387
Sau96I	GGNCC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	5 cut(s)	40, 146, 346, 364, 420
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	253, 272, 293
SsiI	CCGC	2 cut(s)	51, 228
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	2 cut(s)	89, 267
TaaI	ACNGT	3 cut(s)	13, 62, 398
TaiI	ACGT	2 cut(s)	146, 420
TasI	AATT	3 cut(s)	253, 272, 293
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	20, 62
TseI	GCWGC	2 cut(s)	237, 359
Tsp45I	GTSAC	2 cut(s)	20, 62
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	89, 267
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.