Rroxscaffold_7G00181510

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20596315 .. 20597017
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181510.1

Sequence Viewer

Length: 309 bp
ATGATCACAAAGCTTCATTTCACCTCTTTCTTGATCCTCCTCATCATCGCTATCCTACTCCTTACATCAGTTCGTGAAAATGGAGTGGTGGTGTGTAAAGATGACGATGATGATGAGGATCCATATATAGGGGATCCTAATATAGGGGAGCCTTTCAGGTGCATAACATCGTGGGACTGTACAACTAATGAAGCTTGCAAGCGAGACTGCTCCCAGAAATTTCCCCAAGGTCGTGGTTTCTGCAAATCCGAGCCCCCTTTCAAGGCTTGCTTGTGCTCCTACAATTGCCCCCTCCACCACCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.48

Weight (kDa)

5.18

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 28, 113, 126, 128, 141
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 128, 143, 262
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 2 cut(s) 13, 194
AluI AGCT 2 cut(s) 13, 194
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 5 cut(s) 28, 113, 126, 128, 141
ApoI RAATTY 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 13
BamHI GGATCC 2 cut(s) 118, 133
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 278
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 303
BmiI GGNNCC 3 cut(s) 120, 135, 150
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 143, 262
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 3 cut(s) 128, 143, 262
BseRI GAGGAG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 278
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 128, 143, 262
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 255, 278
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 4 cut(s) 3, 33, 118, 133
BspLI GGNNCC 3 cut(s) 120, 135, 150
BspPI GGATC 5 cut(s) 28, 113, 126, 128, 141
BsrGI TGTACA 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 4 cut(s) 3, 33, 118, 133
BssT1I CCWWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 196, 200, 268
BstENI CCTNNNNNAGG 1 cut(s) 141
BstKTI GATC 4 cut(s) 6, 36, 121, 136
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 3, 33, 118, 133
BstX2I RGATCY 2 cut(s) 118, 133
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 2 cut(s) 118, 133
BtgZI GCGATG 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 196, 200, 268
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 5 cut(s) 13, 151, 194, 253, 266
CviKI_1 RGCY 5 cut(s) 13, 151, 194, 253, 266
CviQI GTAC 1 cut(s) 180
DpnI GATC 4 cut(s) 5, 35, 120, 135
DpnII GATC 4 cut(s) 3, 33, 118, 133
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 226
FaiI YATR 5 cut(s) 124, 126, 128, 143, 164
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 3
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 1 cut(s) 303
HindIII AAGCTT 2 cut(s) 11, 192
HphI GGTGA 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 31, 74
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 162, 198, 243
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 33, 118, 133
LmnI GCTCC 3 cut(s) 148, 215, 281
LpnPI CCDG 2 cut(s) 142, 227
MaeI CTAG 1 cut(s) 303
MalI GATC 4 cut(s) 5, 35, 120, 135
MboI GATC 4 cut(s) 3, 33, 118, 133
MfeI CAATTG 1 cut(s) 283
MflI RGATCY 2 cut(s) 118, 133
MhlI GDGCHC 2 cut(s) 255, 278
MluCI AATT 2 cut(s) 218, 283
MnlI CCTC 5 cut(s) 34, 47, 50, 109, 302
MunI CAATTG 1 cut(s) 283
NdeII GATC 4 cut(s) 3, 33, 118, 133
NlaIV GGNNCC 3 cut(s) 120, 135, 150
PspN4I GGNNCC 3 cut(s) 120, 135, 150
PsuI RGATCY 2 cut(s) 118, 133
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
Sau3AI GATC 4 cut(s) 3, 33, 118, 133
SduI GDGCHC 2 cut(s) 255, 278
SetI ASST 5 cut(s) 15, 26, 161, 196, 232
Sse9I AATT 2 cut(s) 218, 283
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 179
TasI AATT 2 cut(s) 218, 283
TatI WGTACW 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 5, 204
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 218
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.