AT5G38330

Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003779
Physical Location & Seq
Forward (+)
15317683 .. 15318511
829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38330.1

Sequence Viewer

Length: 369 bp
ATGGAGAGGATACCTTCACTTGCATCCCTTGTTAGCTTGCTTATCATATTTGCCACAGTTGTTAATCAGACAAGAGCAAGTATCTGTAACGACAGACTAGGCCTTTGCGATGGTTGCGATCAAAGATGTAAGGCCAAACACGGGCCATCGTGCGAAAGTAAATGTGACGGGCCGGTTGGAATGTTGCTGTGCACGTGCACTTACGAGTGTGGTCCAACAAAGCTTTGCAATGGTGGGCTTGGCAATTGCGGTGAAAGTTGTAATGAACAATGTTGTGATAGGAATTGTGCACAAAGATACAATGGTGGACATGGATATTGTAACACCCTTGATGATTTTAGTTTGTGCTTATGCAAGTACCCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

122

Amino Acids

13.12

Weight (kDa)

6.05

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AcvI CACGTG 1 cut(s) 195
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 36, 223
AluI AGCT 2 cut(s) 36, 223
Alw21I GWGCWC 3 cut(s) 194, 200, 292
Alw44I GTGCAC 3 cut(s) 190, 196, 288
AoxI GGCC 4 cut(s) 100, 132, 143, 170
ApaLI GTGCAC 3 cut(s) 190, 196, 288
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspS9I GGNCC 3 cut(s) 143, 170, 212
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 3 cut(s) 194, 200, 292
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BbrPI CACGTG 1 cut(s) 195
Bbv12I GWGCWC 3 cut(s) 194, 200, 292
BccI CCATC 2 cut(s) 104, 154
BciVI GTATCC 1 cut(s) 3
BfaI CTAG 1 cut(s) 98
BfuI GTATCC 1 cut(s) 3
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 143, 170, 212
BmsI GCATC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 235
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 235
BseSI GKGCMC 3 cut(s) 194, 200, 292
BshFI GGCC 4 cut(s) 102, 134, 145, 172
BsiHKAI GWGCWC 3 cut(s) 194, 200, 292
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 4 cut(s) 102, 134, 145, 172
Bsp1286I GDGCHC 3 cut(s) 194, 200, 292
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 249
BspANI GGCC 4 cut(s) 102, 134, 145, 172
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 38
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSLI GKGCMC 3 cut(s) 194, 200, 292
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 4 cut(s) 102, 134, 145, 172
BtgZI GCGATG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 143, 170, 212
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 311
CviJI RGCY 7 cut(s) 36, 102, 134, 145, 172, 223, 238
CviKI_1 RGCY 7 cut(s) 36, 102, 134, 145, 172, 223, 238
CviQI GTAC 1 cut(s) 358
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 212
Eco72I CACGTG 1 cut(s) 195
FaeI CATG 1 cut(s) 314
FaiI YATR 3 cut(s) 47, 312, 352
FatI CATG 1 cut(s) 310
FokI GGATG 1 cut(s) 10
FspBI CTAG 1 cut(s) 98
HaeIII GGCC 4 cut(s) 102, 134, 145, 172
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 221
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 4 cut(s) 192, 198, 290, 308
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 4 cut(s) 192, 198, 290, 308
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 6 cut(s) 23, 192, 198, 228, 290, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 1 cut(s) 186
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 3 cut(s) 86, 164, 320
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MfeI CAATTG 1 cut(s) 244
MhlI GDGCHC 3 cut(s) 194, 200, 292
MluCI AATT 2 cut(s) 244, 283
MmeI TCCRAC 2 cut(s) 157, 239
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 102
PmaCI CACGTG 1 cut(s) 195
PmlI CACGTG 1 cut(s) 195
Ppu21I YACGTR 1 cut(s) 195
PspCI CACGTG 1 cut(s) 195
PspPI GGNCC 3 cut(s) 143, 170, 212
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 3 cut(s) 143, 170, 212
SduI GDGCHC 3 cut(s) 194, 200, 292
SetI ASST 4 cut(s) 16, 38, 197, 225
SfaNI GCATC 1 cut(s) 32
SinI GGWCC 1 cut(s) 212
Sse9I AATT 2 cut(s) 244, 283
SseBI AGGCCT 1 cut(s) 102
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 102
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 197
TasI AATT 2 cut(s) 244, 283
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 279
VneI GTGCAC 3 cut(s) 190, 196, 288
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.