AT5G42242

disruption of cells of other organism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003779
Physical Location & Seq
Reverse (-)
16891188 .. 16891909
722 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42242.1

Sequence Viewer

Length: 363 bp
ATGGAGAGGACAAGTACTTCACTTCTATTCCTGCTTAGCTTACTTATCATATTTGCCTCAGCTGTGAATCAGATAAGAGCACAGACATGTGACGAGAACCTAAGCTCTTGTGAAAATTGCGACCAAAGGTGCAAGGCCAAACACGGACCATCGTCCGTAAGCAAATGTAACGGTCCGGATGGGACGTGCGGATGTGCCTCATTTAAACCAGCCAAACTGTGCATCGGTGCGACTGATATGTGCACTGATAAATGTCCTACAAGTTGTTGTGATAGACAATGCGCTATAAAATATAAGAATGGAAAAGGGGGTTGTGTCGACTATGCTGGTTATAGGATGTGCATTTGCGAGTACACTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

8.1

Isoelectric Point (pI)

17.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 1 cut(s) 189
AfaI GTAC 2 cut(s) 16, 353
AflIII ACRYGT 1 cut(s) 86
AjiI CACGTC 1 cut(s) 186
AluBI AGCT 3 cut(s) 39, 62, 105
AluI AGCT 3 cut(s) 39, 62, 105
Alw21I GWGCWC 2 cut(s) 82, 245
Alw44I GTGCAC 1 cut(s) 241
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 135
ApaLI GTGCAC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 146, 173
AvaII GGWCC 2 cut(s) 146, 173
BaeGI GKGCMC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 82, 245
BbvCI CCTCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 157, 173
BlpI GCTNAGC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 146, 173
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 146, 173
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 151
Bpu10I CCTNAGC 2 cut(s) 58, 101
Bpu1102I GCTNAGC 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 3 cut(s) 184, 197, 342
BseMII CTCAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 245
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 82, 245
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 82, 245
Bsp13I TCCGGA 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 173, 219
BstDEI CTNAG 3 cut(s) 35, 58, 101
BstF5I GGATG 3 cut(s) 184, 197, 342
BstHHI GCGC 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 90
BstPAI GACNNNNGTC 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 137
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 184, 197, 342
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 146, 173
CpoI CGGWCCG 1 cut(s) 173
Csp6I GTAC 2 cut(s) 15, 352
CspI CGGWCCG 1 cut(s) 173
CviAII CATG 1 cut(s) 87
CviJI RGCY 5 cut(s) 39, 62, 105, 137, 212
CviKI_1 RGCY 5 cut(s) 39, 62, 105, 137, 212
CviQI GTAC 2 cut(s) 15, 352
DdeI CTNAG 3 cut(s) 35, 58, 101
DraI TTTAAA 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 146, 173
FaeI CATG 1 cut(s) 90
FaiI YATR 7 cut(s) 50, 88, 239, 287, 294, 324, 333
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 86
FblI GTMKAC 1 cut(s) 318
FokI GGATG 3 cut(s) 191, 204, 349
GlaI GCGC 1 cut(s) 283
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 284
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 3 cut(s) 243, 319, 354
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 3 cut(s) 243, 319, 354
HpyCH4III ACNGT 2 cut(s) 173, 219
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 132, 222, 243, 342
HpyF3I CTNAG 3 cut(s) 35, 58, 101
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 175
LpnPI CCDG 4 cut(s) 44, 189, 222, 312
LweI GCATC 1 cut(s) 231
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 89, 167
MhlI GDGCHC 2 cut(s) 82, 245
MluCI AATT 1 cut(s) 115
MnlI CCTC 2 cut(s) 67, 208
MroI TCCGGA 1 cut(s) 175
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 176
NlaIII CATG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 151
PspPI GGNCC 2 cut(s) 146, 173
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 16, 353
RsaNI GTAC 2 cut(s) 15, 352
RseI CAYNNNNRTG 1 cut(s) 85
Rsr2I CGGWCCG 1 cut(s) 173
RsrII CGGWCCG 1 cut(s) 173
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 146, 173
ScaI AGTACT 1 cut(s) 16
SduI GDGCHC 2 cut(s) 82, 245
SetI ASST 6 cut(s) 41, 64, 102, 107, 131, 188
SfaNI GCATC 1 cut(s) 231
SinI GGWCC 2 cut(s) 146, 173
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 2 cut(s) 173, 219
TaiI ACGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 115
TatI WGTACW 2 cut(s) 14, 351
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 145, 159
TspRI CASTG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 146, 173
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.