Rh4DG078100

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
11583187 .. 11588677
5491 bp
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UTR
Exon/CDS
Intron
Rh4DG078100.1

Sequence Viewer

Length: 228 bp
ATGGCTATCACATCCTGCACTCAGATTGTTCTCCTTGCTTTTGCATCAGCTGCCATAATGGGGATGATGGTGAAGGCAGAAATATGCAACGAATCGATCGGTTCTTGTCAAGGCATCGACTGCAACCAAGTCTGCGTCAACAAACATCCCGGTGGCTCCGGCACATGTTGCCGTTTATCGGGTCTTCAGTCACCATCTCATGGAAGAATTGACACAAAGTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

7.82

Weight (kDa)

8.22

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 60, 178, 200
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 82, 183
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 61, 202
BceAI ACGGC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 150
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 53, 123
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 95
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 178, 200
BseCI ATCGAT 1 cut(s) 95
BseGI GGATG 3 cut(s) 11, 69, 145
BseLI CCNNNNNNNGG 3 cut(s) 60, 178, 200
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 150, 159
BslI CCNNNNNNNGG 3 cut(s) 60, 178, 200
Bsp143I GATC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 157
BssMI GATC 1 cut(s) 96
BstAPI GCANNNNNTGC 3 cut(s) 50, 120, 168
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 11, 69, 145
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 3 cut(s) 50, 120, 168
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 95
BtsCI GGATG 3 cut(s) 11, 69, 145
ClaI ATCGAT 1 cut(s) 95
CseI GACGC 1 cut(s) 124
CviAII CATG 2 cut(s) 165, 200
CviJI RGCY 3 cut(s) 5, 50, 156
CviKI_1 RGCY 3 cut(s) 5, 50, 156
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 170
FaeI CATG 2 cut(s) 168, 203
FaiI YATR 4 cut(s) 56, 85, 166, 201
FatI CATG 2 cut(s) 164, 199
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 76, 132
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HapII CCGG 2 cut(s) 150, 159
HgaI GACGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 168, 203
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 150, 159
HphI GGTGA 2 cut(s) 82, 183
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 18, 44, 87, 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 120, 168
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 168, 203
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 28, 163, 172
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 53, 123
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 2 cut(s) 176, 216
MluCI AATT 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 2 cut(s) 150, 159
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 50, 120, 168
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 168, 203
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 189
NspI RCATGY 1 cut(s) 168
PciI ACATGT 1 cut(s) 164
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 52
Ple19I CGATCG 1 cut(s) 99
PscI ACATGT 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 157
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 150
SetI ASST 1 cut(s) 52
SfaNI GCATC 2 cut(s) 53, 123
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 148
TaqI TCGA 2 cut(s) 95, 117
TasI AATT 1 cut(s) 207
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 200
XceI RCATGY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.