Prupe.1G080000_v2.0.a1

Defensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003779
Physical Location & Seq
Forward (+)
5840338 .. 5840996
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G080000.1

Sequence Viewer

Length: 405 bp
ATGGCTACTCTCTCTCGATCTTCTTGCATCATCATTGTTCTCCTTGTCTTCACTGCAGGGACCCTAATGCCCATGGTGAAAGGTGACGTTTGCACAGAAGACGTAGGTACATGTGGTGATGACTGCAGTTCAAGGTGCGCATCTGCACATCCTGGGGCGAAGGCTGCCTGCGTTTTGAACAACATCCCAGTTTGTAGATGCTACTTCGACTGTGGACCTCCAGTCCCACCGCCATACTCAAAAACTTGCAAATTAAGCTTGGGAATATGGGGTGAGAGGTGCTCTGAGAAGGACTGCAACTCACAGTGTGCTGCCAAATATCCTGGACCCCAACAAGGAATGGGATACTGTTATAGTGTTGGAGCTCCTGTTTATACTTCTTGTTTTTGTCAATACAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

135

Amino Acids

14.22

Weight (kDa)

7.82

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 139
AciI CCGC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 132, 178
AhdI GACNNNNNGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 151, 322
AluBI AGCT 2 cut(s) 258, 365
AluI AGCT 2 cut(s) 258, 365
Alw21I GWGCWC 2 cut(s) 284, 367
ApeKI GCWGC 2 cut(s) 164, 311
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 60, 215, 326
AsuHPI GGTGA 4 cut(s) 88, 95, 128, 284
AvaII GGWCC 3 cut(s) 60, 215, 326
BanII GRGCYC 1 cut(s) 367
BbsI GAAGAC 2 cut(s) 40, 105
Bbv12I GWGCWC 2 cut(s) 284, 367
BbvI GCAGC 2 cut(s) 151, 298
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 2 cut(s) 153, 324
BciVI GTATCC 1 cut(s) 338
BfmI CTRYAG 2 cut(s) 54, 124
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 2 cut(s) 165, 312
BlsI GCNGC 2 cut(s) 166, 313
Bme1390I CCNGG 2 cut(s) 153, 324
Bme18I GGWCC 3 cut(s) 60, 215, 326
BmeRI GACNNNNNGTC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 60, 215, 326
BmiI GGNNCC 3 cut(s) 61, 62, 328
BmrFI CCNGG 2 cut(s) 153, 324
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 3 cut(s) 36, 149, 188
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 2 cut(s) 40, 105
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 72, 152
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 188, 221
BseBI CCWGG 2 cut(s) 153, 324
BseDI CCNNGG 2 cut(s) 72, 152
BseGI GGATG 2 cut(s) 148, 183
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 188, 221
BseXI GCAGC 2 cut(s) 151, 298
BsgI GTGCAG 1 cut(s) 129
BsiHKAI GWGCWC 2 cut(s) 284, 367
BslFI GGGAC 2 cut(s) 73, 209
BslI CCNNNNNNNGG 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 73, 209
Bsp1286I GDGCHC 2 cut(s) 284, 367
Bsp143I GATC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 61, 62, 328
BspMAI CTGCAG 2 cut(s) 58, 128
BsrI ACTGG 2 cut(s) 188, 221
BssECI CCNNGG 2 cut(s) 72, 152
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 153, 324
Bst4CI ACNGT 3 cut(s) 212, 306, 350
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 148, 183
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 164, 255
BstNI CCWGG 2 cut(s) 153, 324
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 151, 322
BstSFI CTRYAG 2 cut(s) 54, 124
BstV1I GCAGC 2 cut(s) 151, 298
BstV2I GAAGAC 2 cut(s) 40, 105
BsuI GTATCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 148, 183
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 311
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 60, 215, 326
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 73, 111
CviJI RGCY 4 cut(s) 5, 164, 258, 365
CviKI_1 RGCY 4 cut(s) 5, 164, 258, 365
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
DraIII CACNNNGTG 1 cut(s) 308
DriI GACNNNNNGTC 1 cut(s) 221
Eam1105I GACNNNNNGTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 60, 215, 326
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 151, 322
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 76, 114
FaiI YATR 6 cut(s) 74, 112, 235, 268, 354, 375
FaqI GGGAC 2 cut(s) 73, 209
FatI CATG 2 cut(s) 72, 110
Fnu4HI GCNGC 2 cut(s) 165, 312
FokI GGATG 2 cut(s) 135, 170
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 165, 312
FspAI RTGCGCAY 1 cut(s) 139
FspI TGCGCA 1 cut(s) 139
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 165, 312
GsuI CTGGAG 1 cut(s) 204
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 76, 114
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 256
HphI GGTGA 4 cut(s) 88, 95, 128, 284
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 154, 283
HpyCH4III ACNGT 3 cut(s) 212, 306, 350
HpyCH4IV ACGT 2 cut(s) 87, 102
HpyCH4V TGCA 7 cut(s) 27, 56, 93, 126, 146, 249, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 255
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 87, 102
Hsp92II CATG 2 cut(s) 76, 114
HspAI GCGC 1 cut(s) 138
KflI GGGWCCC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 362, 370
LpnPI CCDG 9 cut(s) 42, 138, 165, 181, 201, 234, 309, 336, 381
Lsp1109I GCAGC 2 cut(s) 151, 298
LweI GCATC 3 cut(s) 36, 149, 188
MaeII ACGT 2 cut(s) 87, 102
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 12, 40, 110
MhlI GDGCHC 2 cut(s) 284, 367
MluCI AATT 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 2 cut(s) 228, 270
MseI TTAA 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 153, 324
MvaI CCWGG 2 cut(s) 153, 324
MwoI GCNNNNNNNGC 2 cut(s) 164, 255
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 76, 114
NlaIV GGNNCC 3 cut(s) 61, 62, 328
NmuCI GTSAC 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 139
NspI RCATGY 1 cut(s) 114
PciI ACATGT 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 2 cut(s) 166, 313
PpuMI RGGWCCY 1 cut(s) 60
PscI ACATGT 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 151, 322
PspGI CCWGG 2 cut(s) 151, 322
PspN4I GGNNCC 3 cut(s) 61, 62, 328
PspPI GGNCC 3 cut(s) 60, 215, 326
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 2 cut(s) 58, 128
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 165, 312
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 3 cut(s) 60, 215, 326
ScrFI CCNGG 2 cut(s) 153, 324
SduI GDGCHC 2 cut(s) 284, 367
SetI ASST 9 cut(s) 85, 90, 105, 109, 137, 220, 260, 281, 367
SfaNI GCATC 3 cut(s) 36, 149, 188
SfcI CTRYAG 2 cut(s) 54, 124
SinI GGWCC 3 cut(s) 60, 215, 326
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 230
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 151, 322
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 212, 306, 350
TaiI ACGT 2 cut(s) 90, 105
TaqI TCGA 2 cut(s) 16, 207
TasI AATT 1 cut(s) 251
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 58, 311
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 164, 311
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 2 cut(s) 58, 311
VpaK11BI GGWCC 3 cut(s) 60, 215, 326
XceI RCATGY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.