Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

5612652 .. 5614837

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTTATTAATAATAATAATAAGGCAGCCACGTTGGTTCACGTGAAAGGGGTTTGCCATCCGGAACTACCACCTGGACTTTGCATGTGCTCTTACTTCTGCGGTCCACCGCCGGCAGCGAAGCCATCCAGAAGATCGTGGACCAAAGCCACCCAAAAGATTGTGCACGAGTGCAACACTGACTGTTGTAACGCAAAATGTGCTAGTCAATATAATGATGGGGTTGGTATTTGTGATCATATTGTTGGACCCTCAGTGTGTATGTGCAACTATGACTGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

95

Amino Acids

10.15

Weight (kDa)

7.48

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	2 cut(s)	102, 110
AcvI	CACGTG	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	73
Alw21I	GWGCWC	2 cut(s)	92, 168
Alw44I	GTGCAC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	26, 116
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	104, 141, 248
AvaII	GGWCC	3 cut(s)	104, 141, 248
BaeGI	GKGCMC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	167
BbrPI	CACGTG	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	92, 168
BbvI	GCAGC	2 cut(s)	38, 128
BccI	CCATC	3 cut(s)	66, 133, 212
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	27, 117
BlsI	GCNGC	2 cut(s)	28, 118
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	3 cut(s)	104, 141, 248
BmgT120I	GGNCC	3 cut(s)	104, 141, 248
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	58, 125
BseMII	CTCAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	38, 128
BsiHKAI	GWGCWC	2 cut(s)	92, 168
BsiSI	CCGG	2 cut(s)	62, 113
Bsp1286I	GDGCHC	2 cut(s)	92, 168
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	134, 235
BspACI	CCGC	2 cut(s)	102, 110
BspCNI	CTCAG	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	2 cut(s)	134, 235
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	58, 125
BstKTI	GATC	2 cut(s)	137, 238
BstMBI	GATC	2 cut(s)	134, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	38, 128
BtsCI	GGATG	2 cut(s)	58, 125
BtsIMutI	CAGTG	2 cut(s)	177, 261
Cac8I	GCNNGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	104, 141, 248
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	29, 124, 149
CviKI_1	RGCY	3 cut(s)	29, 124, 149
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	2 cut(s)	136, 237
DpnII	GATC	2 cut(s)	134, 235
Eco47I	GGWCC	3 cut(s)	104, 141, 248
Eco72I	CACGTG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	88
FaiI	YATR	5 cut(s)	86, 213, 240, 263, 273
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	27, 117
FokI	GGATG	2 cut(s)	45, 112
Fsp4HI	GCNGC	2 cut(s)	27, 117
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	27, 117
HapII	CCGG	2 cut(s)	62, 113
Hin1II	CATG	1 cut(s)	88
HpaII	CCGG	2 cut(s)	62, 113
Hpy166II	GTNNAC	4 cut(s)	40, 107, 141, 166
Hpy188III	TCNNGA	2 cut(s)	62, 129
Hpy8I	GTNNAC	4 cut(s)	40, 107, 141, 166
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	32, 42
HpyCH4V	TGCA	4 cut(s)	84, 166, 174, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	2 cut(s)	32, 42
Hsp92II	CATG	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	134, 235
LpnPI	CCDG	5 cut(s)	60, 75, 87, 126, 142
Lsp1109I	GCAGC	2 cut(s)	38, 128
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	32, 42
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	136, 237
MboI	GATC	2 cut(s)	134, 235
MboII	GAAGA	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	92, 168
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	1 cut(s)	262
MroI	TCCGGA	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	112
MseI	TTAA	1 cut(s)	9
MspI	CCGG	2 cut(s)	62, 113
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	200
NaeI	GCCGGC	1 cut(s)	114
NdeII	GATC	2 cut(s)	134, 235
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	28, 118
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	3 cut(s)	104, 141, 248
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	27, 117
Sau3AI	GATC	2 cut(s)	134, 235
Sau96I	GGNCC	3 cut(s)	104, 141, 248
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	92, 168
SetI	ASST	3 cut(s)	35, 45, 76
SinI	GGWCC	3 cut(s)	104, 141, 248
SsiI	CCGC	2 cut(s)	102, 110
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	35, 45
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	184, 261
TseI	GCWGC	2 cut(s)	26, 116
TspRI	CASTG	2 cut(s)	184, 261
VneI	GTGCAC	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	104, 141, 248
VspI	ATTAAT	1 cut(s)	9
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.