Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003779

Physical Location & Seq

Genomic Coordinates Forward (+)

15314060 .. 15315226

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38317.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGAGGATAACTTCACTTGTATTCTTTGCTAGCTTCCTTATTATATTTGTCTCAGGTGTTAATCAGACAAGAGCAGATTCATGCGATGAAAGTCTAGGCCTTTGCGAAACATGTGACGAAAGATGCCAGGCCAAACACGGGCCATCGTGCATAAGCAAATGTGACGGAGAGGTTGGGATGTTGTCGTGCACGTGCACTTACGAGTGTGGACCACCTTTACCCCCCAAAGGTAACGTTTGCAGCGGTGGGACTGGTATGTGCAGTGGAAAGTGTCCATATAAATGTTGTGATACCAGTTGCGCACAAAAGTATAATGGTGGACGTGGATTTTGTAACTCCTTTGGTAATTATAATTTTTGCCAATGCGAATACCCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLR1-BP

Protein Analysis

127

Amino Acids

13.62

Weight (kDa)

5.28

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30070 AT4G30074 AT5G38317 AT5G38330 AT5G42242
fragaria_vesca	FvH4_2g17511 FvH4_2g17531 FvH4_2g20970 FvH4_4g06580
malus_domestica	MD12G1050000.v1.1
prunus_persica	Prupe.1G068300_v2.0.a1 Prupe.1G078000_v2.0.a1 Prupe.1G079900_v2.0.a1 Prupe.1G080000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287351
rosa_laevigata	RLG00000012496
rosa_multiflora	Rmu_sc0007029.1_g000029
rosa_roxburghii	Rroxscaffold_159G00433110 Rroxscaffold_175G00431890 Rroxscaffold_4G00325080 Rroxscaffold_5G00343450 Rroxscaffold_5G00345150 Rroxscaffold_6G00398330 Rroxscaffold_7G00181510 Rroxscaffold_7G00186350
rosa_rugosa	Rorug04G0008400 Rorug06G0187300
rosa_samantha	Rh4DG078100 Rh4DG092300 Rh6AG298700 Rh6CG305400 Rh6CG312800 Rh6DG296100
rosa_wichuraiana	Rw0G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
Acc16I	TGCGCA	1 cut(s)	304
AciI	CCGC	1 cut(s)	246
AclI	AACGTT	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	141, 230
AflIII	ACRYGT	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	2 cut(s)	194, 200
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	2 cut(s)	190, 196
AoxI	GGCC	3 cut(s)	100, 132, 143
ApaLI	GTGCAC	2 cut(s)	190, 196
ApeKI	GCWGC	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	143, 212
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	194, 200
BbrPI	CACGTG	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	194, 200
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	33, 98
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	143, 212
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	116
BmtI	GCTAGC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 230
Bse1I	ACTGG	2 cut(s)	259, 297
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	141, 230
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	259, 297
BseSI	GKGCMC	2 cut(s)	194, 200
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	283
BshFI	GGCC	3 cut(s)	102, 134, 145
BsiHKAI	GWGCWC	2 cut(s)	194, 200
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	141, 230
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	102, 134, 145
Bsp1286I	GDGCHC	2 cut(s)	194, 200
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	102, 134, 145
BspCNI	CTCAG	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	259, 297
Bst2UI	CCWGG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	2 cut(s)	194, 200
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	102, 134, 145
BtgZI	GCGATG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	143, 212
CviAII	CATG	2 cut(s)	84, 114
CviJI	RGCY	4 cut(s)	36, 102, 134, 145
CviKI_1	RGCY	4 cut(s)	36, 102, 134, 145
DdeI	CTNAG	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	212
Eco72I	CACGTG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	87, 117
FaiI	YATR	9 cut(s)	47, 85, 115, 155, 260, 280, 282, 315, 354
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	83, 113
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	33, 98
FspI	TGCGCA	1 cut(s)	304
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	102, 134, 145
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	87, 117
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	4 cut(s)	192, 198, 212, 323
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	4 cut(s)	192, 198, 212, 323
HpyCH4IV	ACGT	3 cut(s)	194, 237, 325
HpyCH4V	TGCA	5 cut(s)	153, 192, 198, 243, 264
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	3 cut(s)	194, 237, 325
Hsp92II	CATG	2 cut(s)	87, 117
HspAI	GCGC	1 cut(s)	303
LpnPI	CCDG	5 cut(s)	42, 116, 143, 240, 310
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	33, 98
MaeII	ACGT	3 cut(s)	194, 237, 325
MaeIII	GTNAC	4 cut(s)	116, 164, 233, 335
MhlI	GDGCHC	2 cut(s)	194, 200
MluCI	AATT	2 cut(s)	349, 355
MnlI	CCTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	87, 117
NmuCI	GTSAC	2 cut(s)	116, 164
NsbI	TGCGCA	1 cut(s)	304
NspI	RCATGY	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	102
PciI	ACATGT	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	245
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
Ppu21I	YACGTR	1 cut(s)	195
PscI	ACATGT	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	129
PspCI	CACGTG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	143, 212
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	143, 212
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	194, 200
SetI	ASST	8 cut(s)	38, 61, 177, 197, 220, 235, 240, 328
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	349, 355
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	33, 98
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	3 cut(s)	197, 240, 328
TasI	AATT	2 cut(s)	349, 355
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	116, 164
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	2 cut(s)	116, 164
TspDTI	ATGAA	2 cut(s)	72, 105
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	2 cut(s)	190, 196
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	117
XspI	CTAG	2 cut(s)	33, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.